RNA–Protein interactions for RNA: ENST00000583988.1

PPP4R1-227, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-227ENST00000583988 TMEM102Q8N9M5 508 aaPredicted RBP7.06□□□□□ -1.28
PPP4R1-227ENST00000583988 FOXD4L4Q8WXT5 416 aaPredicted RBP7.06□□□□□ -1.28
PPP4R1-227ENST00000583988 NXPE3Q969Y0 559 aa7.06□□□□□ -1.28
PPP4R1-227ENST00000583988 FAM129BQ96TA1 746 aa7.06□□□□□ -1.28
PPP4R1-227ENST00000583988 AMOTL2Q9Y2J4 779 aa7.06□□□□□ -1.28
PPP4R1-227ENST00000583988 PIP4K2BP78356 416 aa7.05□□□□□ -1.28
PPP4R1-227ENST00000583988 BSNDQ8WZ55 320 aa7.05□□□□□ -1.28
PPP4R1-227ENST00000583988 UBL7Q96S82 380 aaPredicted RBP7.05□□□□□ -1.28
PPP4R1-227ENST00000583988 ZFYVE28Q9HCC9 887 aa7.05□□□□□ -1.28
PPP4R1-227ENST00000583988 SOX13Q9UN79 622 aa7.05□□□□□ -1.28
PPP4R1-227ENST00000583988 ERCC3P19447 782 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 ARL4DP49703 201 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 IKBKEQ14164 716 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 HGSNATQ68CP4 663 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 Q6ZS46 218 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 KIAA1211Q6ZU35 1233 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 WNT8BQ93098 351 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 DMRTB1Q96MA1 342 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 CEP41Q9BYV8 373 aa7.04□□□□□ -1.28
PPP4R1-227ENST00000583988 MAPK1P28482 360 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 C19orf57Q0VDD7 668 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 TMCO4Q5TGY1 634 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 PEAR1Q5VY43 1037 aaPredicted RBP7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 TMC7Q7Z402 723 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 TMC1Q8TDI8 760 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 ALKBH8Q96BT7 664 aaKnown RBP7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 OSGEPQ9NPF4 335 aa7.03□□□□□ -1.28
PPP4R1-227ENST00000583988 METTL12A8MUP2 240 aa7.02□□□□□ -1.29
PPP4R1-227ENST00000583988 NEFLP07196 543 aa7.02□□□□□ -1.29
PPP4R1-227ENST00000583988 CCDC27Q2M243 656 aa7.02□□□□□ -1.29
PPP4R1-227ENST00000583988 VN1R5Q7Z5H4 357 aa7.02□□□□□ -1.29
PPP4R1-227ENST00000583988 UTP4Q969X6 686 aaKnown RBP7.02□□□□□ -1.29
PPP4R1-227ENST00000583988 SOX1O00570 391 aaPredicted RBP7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 DHX15O43143 795 aaKnown RBP7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 FSTP19883 344 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 DSC3Q14574 896 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 ZSCAN29Q8IWY8 852 aaPredicted RBP7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 ASB16Q96NS5 453 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 BHLHE41Q9C0J9 482 aaPredicted RBP7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 NIF3L1Q9GZT8 377 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 ZFP64Q9NPA5 681 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 STOML1Q9UBI4 398 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 RAXQ9Y2V3 346 aa7.01□□□□□ -1.29
PPP4R1-227ENST00000583988 GPR182O15218 404 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 TREHO43280 583 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 SART1O43290 800 aaKnown RBP7□□□□□ -1.29
PPP4R1-227ENST00000583988 PLCB3Q01970 1234 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 ARTNQ5T4W7 220 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 USPL1Q5W0Q7 1092 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 ARMC10Q8N2F6 343 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 RUSC1Q9BVN2 902 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 USP26Q9BXU7 913 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 RNF208Q9H0X6 261 aa7□□□□□ -1.29
PPP4R1-227ENST00000583988 ORC1Q13415 861 aa6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 FDX2Q6P4F2 183 aa6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 GALNT12Q8IXK2 581 aa6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 FAM46AQ96IP4 442 aaKnown RBP6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 LIN7BQ9HAP6 207 aa6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 CCDC9Q9Y3X0 531 aaKnown RBP6.99□□□□□ -1.29
PPP4R1-227ENST00000583988 A0A1W2PP55 124 aa6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 ESRRAP11474 423 aaPredicted RBP6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 GSTM4Q03013 218 aa6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 ANKRD34AQ69YU3 496 aa6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 DNAJC25Q9H1X3 360 aa6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 KCNF1Q9H3M0 494 aa6.98□□□□□ -1.29
PPP4R1-227ENST00000583988 A0A096LPE4 126 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 A0A1W2PPZ6 126 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 CPNE3O75131 537 aaKnown RBP6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 PREPP48147 710 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 LRP8Q14114 963 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 COL19A1Q14993 1142 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 SPRED3Q2MJR0 410 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 UVSSAQ2YD98 709 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 NUTM2GQ5VZR2 741 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 DNAJC14Q6Y2X3 702 aaPredicted RBP6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 NBPF11Q86T75 865 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 MYRFLQ96LU7 910 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 PODXL2Q9NZ53 605 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 RNF112Q9ULX5 631 aa6.97□□□□□ -1.29
PPP4R1-227ENST00000583988 HMX2A2RU54 273 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 EIF1AYO14602 144 aaKnown RBP6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 HYAL3O43820 417 aaPredicted RBP6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 BMP3P12645 472 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 GRIA4P48058 902 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 MFAP1P55081 439 aaKnown RBP6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 CCNJLQ8IV13 435 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 TRIM42Q8IWZ5 723 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 C12orf50Q8NA57 414 aaPredicted RBP6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 CSRNP1Q96S65 589 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 EHD4Q9H223 541 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 NPHS2Q9NP85 383 aa6.96□□□□□ -1.3
PPP4R1-227ENST00000583988 LOC100289279A0A1B0GTE1 492 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 ANKRD33BA6NCL7 494 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 GAS2O43903 313 aaKnown RBP6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 DLGAP3O95886 979 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 IGLV1-40P01703 118 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 PCDH1Q08174 1060 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 FAM20CQ8IXL6 584 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 TCF12Q99081 682 aa6.95□□□□□ -1.3
PPP4R1-227ENST00000583988 SOX17Q9H6I2 414 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms