RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 A0A1B0GUL7 405 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 ITGBL1O95965 494 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 MS4A1P11836 297 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 HIBADHP31937 336 aaKnown RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 ZNF280AP59817 542 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 IRX6P78412 446 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 HTRA3P83110 453 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 TNIP1Q15025 636 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 TBC1D10BQ4KMP7 808 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 STRIP1Q5VSL9 837 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 MAP1SQ66K74 1059 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 TTLL5Q6EMB2 1281 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 EXOC6Q8TAG9 804 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 LPIN2Q92539 896 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 DPF2Q92785 391 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 EAF2Q96CJ1 260 aaPredicted RBP11.45□□□□□ -0.58
VPS35-206ENST00000565228 CEP126Q9P2H0 1117 aa11.45□□□□□ -0.58
VPS35-206ENST00000565228 CAPN15O75808 1086 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 EAPPQ56P03 285 aaPredicted RBP11.44□□□□□ -0.58
VPS35-206ENST00000565228 PI16Q6UXB8 463 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 KIAA0825Q8IV33 1275 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.44□□□□□ -0.58
VPS35-206ENST00000565228 RBM46Q8TBY0 533 aaKnown RBP11.44□□□□□ -0.58
VPS35-206ENST00000565228 FBXW7Q969H0 707 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 XAGE2Q96GT9 111 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 ZBED3Q96IU2 234 aaPredicted RBP11.44□□□□□ -0.58
VPS35-206ENST00000565228 DBNDD2Q9BQY9 259 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 HDAC5Q9UQL6 1122 aa11.44□□□□□ -0.58
VPS35-206ENST00000565228 PASKQ96RG2 1323 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 SLC5A1P13866 664 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 APLP1P51693 650 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 G3BP1Q13283 466 aaKnown RBP eCLIP11.43□□□□□ -0.583e-8■■■■■ 44.1
VPS35-206ENST00000565228 TNNI3KQ59H18 835 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 RBM26Q5T8P6 1007 aaKnown RBP11.43□□□□□ -0.58
VPS35-206ENST00000565228 CCDC102BQ68D86 513 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 ZNF804AQ7Z570 1209 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 RPAP2Q8IXW5 612 aaPredicted RBP11.43□□□□□ -0.58
VPS35-206ENST00000565228 AGBL3Q8NEM8 1001 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 ZNF384Q8TF68 577 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 ADARB2Q9NS39 739 aaKnown RBP11.43□□□□□ -0.58
VPS35-206ENST00000565228 PGAP2Q9UHJ9 254 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 DBNLQ9UJU6 430 aaKnown RBP11.43□□□□□ -0.58
VPS35-206ENST00000565228 FPGT-TNNI3KV9GXZ4 949 aa11.43□□□□□ -0.58
VPS35-206ENST00000565228 IQCA1LA6NCM1 817 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 F8W031 263 aaPredicted RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 G3V3G9 751 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 TRAF5O00463 557 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 SMARCA5O60264 1052 aaPredicted RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 IFIT1P09914 478 aaKnown RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 RPS12P25398 132 aaKnown RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 CHAF1AQ13111 956 aaPredicted RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 RASGRF1Q13972 1273 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 NBPF9Q3BBW0 867 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 DCAF8Q5TAQ9 597 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 CHADLQ6NUI6 762 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 CCDC8Q9H0W5 538 aaPredicted RBP11.42□□□□□ -0.58
VPS35-206ENST00000565228 IL1RAPL2Q9NP60 686 aa11.42□□□□□ -0.58
VPS35-206ENST00000565228 APBB1O00213 710 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 USP17L8P0C7I0 530 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 USP50Q70EL3 339 aaPredicted RBP11.41□□□□□ -0.58
VPS35-206ENST00000565228 LDHDQ86WU2 507 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 RHPN1Q8TCX5 695 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 GLIS2Q9BZE0 524 aaPredicted RBP11.41□□□□□ -0.58
VPS35-206ENST00000565228 MYOZ2Q9NPC6 264 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 NDUFB9Q9Y6M9 179 aa11.41□□□□□ -0.58
VPS35-206ENST00000565228 WNT10BO00744 389 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 IGHDP01880 384 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 LMOD1P29536 600 aaPredicted RBP11.4□□□□□ -0.58
VPS35-206ENST00000565228 PRDX5P30044 214 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 MCAMP43121 646 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 FKBP1AP62942 108 aaKnown RBP11.4□□□□□ -0.58
VPS35-206ENST00000565228 KIF4BQ2VIQ3 1234 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 MFSD14BQ5SR56 506 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 CNTROBQ8N137 903 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 NEUROD6Q96NK8 337 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 DCTPP1Q9H773 170 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 GPR108Q9NPR9 543 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 HMG20BQ9P0W2 317 aa11.4□□□□□ -0.58
VPS35-206ENST00000565228 ECM29Q5VYK3 1845 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 ADM5C9JUS6 153 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 H7C1D1 291 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 ZBTB22O15209 634 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 ARID4AP29374 1257 aaPredicted RBP11.39□□□□□ -0.59
VPS35-206ENST00000565228 CAVIN4Q5BKX8 364 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 CST9Q5W186 159 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 TBC1D9Q6ZT07 1266 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 PNMA8AQ86V59 439 aaPredicted RBP11.39□□□□□ -0.59
VPS35-206ENST00000565228 JMYQ8N9B5 988 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 SMC1BQ8NDV3 1235 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 PRMT6Q96LA8 375 aaPredicted RBP11.39□□□□□ -0.59
VPS35-206ENST00000565228 TRPM7Q96QT4 1865 aa11.39□□□□□ -0.59
VPS35-206ENST00000565228 FSTL1Q12841 308 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 ANGEL2Q5VTE6 544 aaKnown RBP11.38□□□□□ -0.59
VPS35-206ENST00000565228 PRAMEF18Q5VWM3 479 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 CDAN1Q8IWY9 1227 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 TNS4Q8IZW8 715 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 OTUD7AQ8TE49 926 aaPredicted RBP11.38□□□□□ -0.59
VPS35-206ENST00000565228 SNRKQ9NRH2 765 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 GGA3Q9NZ52 723 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 CLEC11AQ9Y240 323 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms