RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.4■■□□□ 1.02
CLN3-211ENST00000564091 ANGEL1Q9UNK9 670 aaKnown RBP21.4■■□□□ 1.02
CLN3-211ENST00000564091 IL1R1P14778 569 aa21.39■■□□□ 1.01
CLN3-211ENST00000564091 LDLRAD1Q5T700 205 aa21.39■■□□□ 1.01
CLN3-211ENST00000564091 SLC4A10Q6U841 1118 aa21.39■■□□□ 1.01
CLN3-211ENST00000564091 FAM9BQ8IZU0 186 aa21.39■■□□□ 1.01
CLN3-211ENST00000564091 CNNM1Q9NRU3 951 aa21.39■■□□□ 1.01
CLN3-211ENST00000564091 C9orf78Q9NZ63 289 aaPredicted RBP21.39■■□□□ 1.01
CLN3-211ENST00000564091 CLRN2A0PK11 232 aa21.38■■□□□ 1.01
CLN3-211ENST00000564091 CFAP100Q494V2 611 aa21.38■■□□□ 1.01
CLN3-211ENST00000564091 MTMR14Q8NCE2 650 aa21.38■■□□□ 1.01
CLN3-211ENST00000564091 AOX1Q06278 1338 aa21.37■■□□□ 1.01
CLN3-211ENST00000564091 PSME4Q14997 1843 aa21.37■■□□□ 1.01
CLN3-211ENST00000564091 PRMT6Q96LA8 375 aaPredicted RBP21.37■■□□□ 1.01
CLN3-211ENST00000564091 ZNF316A6NFI3 1004 aaPredicted RBP21.36■■□□□ 1.01
CLN3-211ENST00000564091 GPR25O00155 361 aa21.36■■□□□ 1.01
CLN3-211ENST00000564091 SREBF2Q12772 1141 aa21.36■■□□□ 1.01
CLN3-211ENST00000564091 SPRYD7Q5W111 196 aa21.36■■□□□ 1.01
CLN3-211ENST00000564091 R3HDMLQ9H3Y0 253 aa21.36■■□□□ 1.01
CLN3-211ENST00000564091 SPDYE2BA6NHP3 402 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 ALDH1L1O75891 902 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 SPDYE6P0CI01 402 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 SRCIN1Q9C0H9 1055 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 VEZTQ9HBM0 779 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 HPS5Q9UPZ3 1129 aa21.35■■□□□ 1.01
CLN3-211ENST00000564091 MYO1BO43795 1136 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 RBM5P52756 815 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLN3-211ENST00000564091 FKBP1AP62942 108 aaKnown RBP21.34■■□□□ 1.01
CLN3-211ENST00000564091 SLC10A4Q96EP9 437 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 KAZALD1Q96I82 304 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 SUCLG2Q96I99 432 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 CLMNQ96JQ2 1002 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 PUS3Q9BZE2 481 aaKnown RBP21.34■■□□□ 1.01
CLN3-211ENST00000564091 SPEF2Q9C093 1822 aa21.34■■□□□ 1.01
CLN3-211ENST00000564091 PPP1R12BO60237 982 aaPredicted RBP21.33■■□□□ 1.01
CLN3-211ENST00000564091 GYG1P46976 350 aa21.33■■□□□ 1.01
CLN3-211ENST00000564091 MYH3P11055 1940 aa21.32■■□□□ 1
CLN3-211ENST00000564091 NBPF7P0C2Y1 421 aaPredicted RBP21.32■■□□□ 1
CLN3-211ENST00000564091 PKN2Q16513 984 aaKnown RBP21.32■■□□□ 1
CLN3-211ENST00000564091 MAP3K11Q16584 847 aa21.32■■□□□ 1
CLN3-211ENST00000564091 NBPF12Q5TAG4 269 aaPredicted RBP21.32■■□□□ 1
CLN3-211ENST00000564091 PPP2R3BQ9Y5P8 575 aa21.32■■□□□ 1
CLN3-211ENST00000564091 HIBADHP31937 336 aaKnown RBP21.31■■□□□ 1
CLN3-211ENST00000564091 UBE4AQ14139 1066 aa21.31■■□□□ 1
CLN3-211ENST00000564091 RASA3Q14644 834 aa21.31■■□□□ 1
CLN3-211ENST00000564091 SUPT20HL1Q3ZLR7 823 aa21.31■■□□□ 1
CLN3-211ENST00000564091 TDRD7Q8NHU6 1098 aaKnown RBP21.31■■□□□ 1
CLN3-211ENST00000564091 FAM84BQ96KN1 310 aaPredicted RBP21.31■■□□□ 1
CLN3-211ENST00000564091 FAM205AQ6ZU69 1335 aa21.3■■□□□ 1
CLN3-211ENST00000564091 ZNF646O15015 1829 aaPredicted RBP21.3■■□□□ 1
CLN3-211ENST00000564091 NOM1Q5C9Z4 860 aaKnown RBP21.3■■□□□ 1
CLN3-211ENST00000564091 MFSD14BQ5SR56 506 aa21.3■■□□□ 1
CLN3-211ENST00000564091 WNK4Q96J92 1243 aa21.3■■□□□ 1
CLN3-211ENST00000564091 TTF2Q9UNY4 1162 aaKnown RBP21.3■■□□□ 1
CLN3-211ENST00000564091 COL1A1P02452 1464 aaPredicted RBP21.3■■□□□ 1
CLN3-211ENST00000564091 SSC5DA1L4H1 1573 aa21.3■■□□□ 1
CLN3-211ENST00000564091 MANSC4A6NHS7 340 aaPredicted RBP21.29■■□□□ 1
CLN3-211ENST00000564091 FKTNO75072 461 aa21.29■■□□□ 1
CLN3-211ENST00000564091 ZEB1P37275 1124 aaPredicted RBP21.29■■□□□ 1
CLN3-211ENST00000564091 CFHR5Q9BXR6 569 aa21.29■■□□□ 1
CLN3-211ENST00000564091 RIPOR2Q9Y4F9 1068 aa21.29■■□□□ 1
CLN3-211ENST00000564091 USP2O75604 605 aaPredicted RBP21.28■■□□□ 1
CLN3-211ENST00000564091 SLC34A2O95436 690 aa21.28■■□□□ 1
CLN3-211ENST00000564091 IFNL1Q8IU54 200 aa21.28■■□□□ 1
CLN3-211ENST00000564091 BICC1Q9H694 974 aaKnown RBP21.28■■□□□ 1
CLN3-211ENST00000564091 TDRD3Q9H7E2 651 aaKnown RBP21.28■■□□□ 1
CLN3-211ENST00000564091 ZNF70Q9UC06 446 aaPredicted RBP21.28■■□□□ 1
CLN3-211ENST00000564091 IGF2BP3O00425 579 aaKnown RBP eCLIP21.27■■□□□ 1
CLN3-211ENST00000564091 ALDH1A1P00352 501 aa21.27■■□□□ 1
CLN3-211ENST00000564091 ZBTB48P10074 688 aaPredicted RBP21.27■■□□□ 1
CLN3-211ENST00000564091 INHBEP58166 350 aa21.27■■□□□ 1
CLN3-211ENST00000564091 SPDYE2Q495Y8 402 aa21.27■■□□□ 1
CLN3-211ENST00000564091 LRRC24Q50LG9 513 aa21.27■■□□□ 1
CLN3-211ENST00000564091 MRPL50Q8N5N7 158 aaKnown RBP21.27■■□□□ 1
CLN3-211ENST00000564091 IQSEC3Q9UPP2 1182 aaPredicted RBP21.27■■□□□ 1
CLN3-211ENST00000564091 GJA5P36382 358 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 IREB2P48200 963 aaKnown RBP21.26■□□□□ 0.99
CLN3-211ENST00000564091 GRIK5Q16478 980 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 FBXO46Q6PJ61 603 aaPredicted RBP21.26■□□□□ 0.99
CLN3-211ENST00000564091 ANKRD44Q8N8A2 993 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 SERPINA10Q9UK55 444 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 UTYO14607 1347 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 MROH5Q6ZUA9 1318 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 ZNF521Q96K83 1311 aa21.26■□□□□ 0.99
CLN3-211ENST00000564091 AKAP11Q9UKA4 1901 aa21.25■□□□□ 0.99
CLN3-211ENST00000564091 RABL6Q3YEC7 729 aaPredicted RBP21.25■□□□□ 0.99
CLN3-211ENST00000564091 CDAN1Q8IWY9 1227 aa21.25■□□□□ 0.99
CLN3-211ENST00000564091 DZIP1LQ8IYY4 767 aaKnown RBP21.25■□□□□ 0.99
CLN3-211ENST00000564091 TNRC18O15417 2968 aaPredicted RBP21.25■□□□□ 0.99
CLN3-211ENST00000564091 UNCXA6NJT0 531 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 TCP10L2B9ZVM9 353 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 CRKP46108 304 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 CHAF1AQ13111 956 aaPredicted RBP21.24■□□□□ 0.99
CLN3-211ENST00000564091 METTL24Q5JXM2 366 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 FBXO33Q7Z6M2 555 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 VPS37DQ86XT2 251 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 KLHDC4Q8TBB5 520 aa21.24■□□□□ 0.99
CLN3-211ENST00000564091 TNFAIP1Q13829 316 aa21.23■□□□□ 0.99
CLN3-211ENST00000564091 ANKRD13AQ8IZ07 590 aa21.23■□□□□ 0.99
CLN3-211ENST00000564091 TEPSINQ96N21 525 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms