RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 ZBED3Q96IU2 234 aaPredicted RBP15.44■□□□□ 0.06
SPG11-219ENST00000559822 ALDH1L2Q3SY69 923 aa15.43■□□□□ 0.06
SPG11-219ENST00000559822 RABL6Q3YEC7 729 aaPredicted RBP15.43■□□□□ 0.06
SPG11-219ENST00000559822 ARMC9Q7Z3E5 817 aa15.43■□□□□ 0.06
SPG11-219ENST00000559822 SSH1Q8WYL5 1049 aa15.43■□□□□ 0.06
SPG11-219ENST00000559822 AKAP11Q9UKA4 1901 aa15.43■□□□□ 0.06
SPG11-219ENST00000559822 CT47B1P0C2W7 299 aaPredicted RBP15.42■□□□□ 0.06
SPG11-219ENST00000559822 CERS5Q8N5B7 392 aa15.42■□□□□ 0.06
SPG11-219ENST00000559822 KAZALD1Q96I82 304 aa15.42■□□□□ 0.06
SPG11-219ENST00000559822 CSRNP1Q96S65 589 aa15.42■□□□□ 0.06
SPG11-219ENST00000559822 BICC1Q9H694 974 aaKnown RBP15.42■□□□□ 0.06
SPG11-219ENST00000559822 SCAF8Q9UPN6 1271 aaKnown RBP15.42■□□□□ 0.06
SPG11-219ENST00000559822 PPP2R3BQ9Y5P8 575 aa15.42■□□□□ 0.06
SPG11-219ENST00000559822 FAM205AQ6ZU69 1335 aa15.42■□□□□ 0.06
SPG11-219ENST00000559822 F8W031 263 aaPredicted RBP15.41■□□□□ 0.06
SPG11-219ENST00000559822 UBE2Q2LH0YL09 131 aa15.41■□□□□ 0.06
SPG11-219ENST00000559822 HIBADHP31937 336 aaKnown RBP15.41■□□□□ 0.06
SPG11-219ENST00000559822 PRAMEF18Q5VWM3 479 aa15.41■□□□□ 0.06
SPG11-219ENST00000559822 RNF186Q9NXI6 227 aa15.41■□□□□ 0.06
SPG11-219ENST00000559822 ECM29Q5VYK3 1845 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 CASP8AP2Q9UKL3 1982 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 SPDYE2BA6NHP3 402 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 TRPA1O75762 1119 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 SPDYE6P0CI01 402 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 CFAP100Q494V2 611 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 MOB2Q70IA6 237 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 VPS37DQ86XT2 251 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 TDRD7Q8NHU6 1098 aaKnown RBP15.4■□□□□ 0.06
SPG11-219ENST00000559822 PUS3Q9BZE2 481 aaKnown RBP15.4■□□□□ 0.06
SPG11-219ENST00000559822 DEFB129Q9H1M3 183 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 SMC4Q9NTJ3 1288 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 RIPOR2Q9Y4F9 1068 aa15.4■□□□□ 0.06
SPG11-219ENST00000559822 CCER2I3L3R5 266 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 RBM5P52756 815 aaKnown RBP eCLIP15.39■□□□□ 0.05
SPG11-219ENST00000559822 DGKZQ13574 1117 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 TNFAIP1Q13829 316 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 CAVIN4Q5BKX8 364 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 METTL24Q5JXM2 366 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 MFSD14BQ5SR56 506 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 MCOLN1Q9GZU1 580 aa15.39■□□□□ 0.05
SPG11-219ENST00000559822 PPP1R12BO60237 982 aaPredicted RBP15.38■□□□□ 0.05
SPG11-219ENST00000559822 GYG1P46976 350 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 SREBF2Q12772 1141 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 SUPT20HL1Q3ZLR7 823 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 ANKRD44Q8N8A2 993 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 FAM84BQ96KN1 310 aaPredicted RBP15.38■□□□□ 0.05
SPG11-219ENST00000559822 USP44Q9H0E7 712 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 VEZTQ9HBM0 779 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 SERPINA10Q9UK55 444 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 JAG2Q9Y219 1238 aa15.38■□□□□ 0.05
SPG11-219ENST00000559822 ARAP2Q8WZ64 1704 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 UNCXA6NJT0 531 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 CCDC85CA6NKD9 419 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 FRAT2O75474 233 aaPredicted RBP15.37■□□□□ 0.05
SPG11-219ENST00000559822 PDE8BO95263 885 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 TBC1D22AQ8WUA7 517 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 ANGEL1Q9UNK9 670 aaKnown RBP15.37■□□□□ 0.05
SPG11-219ENST00000559822 TTF2Q9UNY4 1162 aaKnown RBP15.37■□□□□ 0.05
SPG11-219ENST00000559822 HDAC5Q9UQL6 1122 aa15.37■□□□□ 0.05
SPG11-219ENST00000559822 CLRN2A0PK11 232 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 PTPN12Q05209 780 aaKnown RBP15.36■□□□□ 0.05
SPG11-219ENST00000559822 PRKG1Q13976 671 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 LRRC24Q50LG9 513 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 LDLRAD1Q5T700 205 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 FBXO33Q7Z6M2 555 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 TRMT2AQ8IZ69 625 aaKnown RBP15.36■□□□□ 0.05
SPG11-219ENST00000559822 CDCA7LQ96GN5 454 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 PRMT6Q96LA8 375 aaPredicted RBP15.36■□□□□ 0.05
SPG11-219ENST00000559822 KIF16BQ96L93 1317 aa15.36■□□□□ 0.05
SPG11-219ENST00000559822 IFIT1P09914 478 aaKnown RBP15.35■□□□□ 0.05
SPG11-219ENST00000559822 TM4SF4P48230 202 aa15.35■□□□□ 0.05
SPG11-219ENST00000559822 PUM3Q15397 648 aaKnown RBP15.35■□□□□ 0.05
SPG11-219ENST00000559822 MAP3K11Q16584 847 aa15.35■□□□□ 0.05
SPG11-219ENST00000559822 VGLL2Q8N8G2 317 aa15.35■□□□□ 0.05
SPG11-219ENST00000559822 API5Q9BZZ5 524 aaKnown RBP15.35■□□□□ 0.05
SPG11-219ENST00000559822 UBTFL1P0CB47 393 aaPredicted RBP15.34■□□□□ 0.05
SPG11-219ENST00000559822 IREB2P48200 963 aaKnown RBP15.34■□□□□ 0.05
SPG11-219ENST00000559822 HDLBPQ00341 1268 aaKnown RBP15.34■□□□□ 0.05
SPG11-219ENST00000559822 SPDYE2Q495Y8 402 aa15.34■□□□□ 0.05
SPG11-219ENST00000559822 SLC10A4Q96EP9 437 aa15.34■□□□□ 0.05
SPG11-219ENST00000559822 FBXO3Q9UK99 471 aa15.34■□□□□ 0.05
SPG11-219ENST00000559822 PCDHAC2Q9Y5I4 1007 aa15.34■□□□□ 0.05
SPG11-219ENST00000559822 EYA2O00167 538 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 ALDH1A1P00352 501 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 ZBTB48P10074 688 aaPredicted RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 TNNI2P48788 182 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 INHBEP58166 350 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 MKRN3Q13064 507 aaKnown RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 CHAF1AQ13111 956 aaPredicted RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 RASA3Q14644 834 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 NOM1Q5C9Z4 860 aaKnown RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 SPRYD7Q5W111 196 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 CTU1Q7Z7A3 348 aaKnown RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 DZIP1LQ8IYY4 767 aaKnown RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 ZNF70Q9UC06 446 aaPredicted RBP15.33■□□□□ 0.04
SPG11-219ENST00000559822 SUGT1Q9Y2Z0 365 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 MAST3O60307 1309 aa15.33■□□□□ 0.04
SPG11-219ENST00000559822 SSC5DA1L4H1 1573 aa15.32■□□□□ 0.04
SPG11-219ENST00000559822 MANSC4A6NHS7 340 aaPredicted RBP15.32■□□□□ 0.04
SPG11-219ENST00000559822 SLC5A1P13866 664 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms