RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CAMKK2Q96RR4 588 aa31.31■■■□□ 2.6
CCDC88C-205ENST00000553403 GPAA1O43292 621 aa31.3■■■□□ 2.6
CCDC88C-205ENST00000553403 IDH1O75874 414 aaKnown RBP31.3■■■□□ 2.6
CCDC88C-205ENST00000553403 HMGB2P26583 209 aaKnown RBP31.3■■■□□ 2.6
CCDC88C-205ENST00000553403 FOXP2O15409 715 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 PDE6AP16499 860 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 MINPP1Q9UNW1 487 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 CARMIL3Q8ND23 1372 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 DOCK2Q92608 1830 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 PSDA5PKW4 1024 aaPredicted RBP31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 PHF14O94880 888 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 BCAMP50895 628 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 ST3GAL1Q11201 340 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 MCTP1Q6DN14 999 aa31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 DHX32Q7L7V1 743 aaKnown RBP31.29■■■□□ 2.6
CCDC88C-205ENST00000553403 TCRBV5S4A2TA0A5A2 114 aa31.28■■■□□ 2.6
CCDC88C-205ENST00000553403 CELF1Q92879 486 aaKnown RBP31.28■■■□□ 2.6
CCDC88C-205ENST00000553403 TCEANC2Q96MN5 208 aa31.28■■■□□ 2.6
CCDC88C-205ENST00000553403 E7EWF7 191 aa31.27■■■□□ 2.6
CCDC88C-205ENST00000553403 RPS8P62241 208 aaKnown RBP31.27■■■□□ 2.6
CCDC88C-205ENST00000553403 MAP3K12Q12852 859 aa31.27■■■□□ 2.6
CCDC88C-205ENST00000553403 ZNF804BA4D1E1 1349 aa31.27■■■□□ 2.6
CCDC88C-205ENST00000553403 ZNF532Q9HCE3 1301 aa31.27■■■□□ 2.6
CCDC88C-205ENST00000553403 IMMTQ16891 758 aaKnown RBP31.26■■■□□ 2.6
CCDC88C-205ENST00000553403 UBR3Q6ZT12 1888 aa31.26■■■□□ 2.59
CCDC88C-205ENST00000553403 PDIA4P13667 645 aaKnown RBP31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 Q6ZUG5 572 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 GNL3LQ9NVN8 582 aaKnown RBP31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 WWC3Q9ULE0 1092 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 LAMA4Q16363 1823 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 FGAP02671 866 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 GJB2P29033 226 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 EXOSC10Q01780 885 aaKnown RBP31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 NFIXQ14938 502 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 NECAB1Q8N987 351 aa31.25■■■□□ 2.59
CCDC88C-205ENST00000553403 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.24■■■□□ 2.59
CCDC88C-205ENST00000553403 TTLL5Q6EMB2 1281 aa31.24■■■□□ 2.59
CCDC88C-205ENST00000553403 MYO5AQ9Y4I1 1855 aaKnown RBP31.23■■■□□ 2.59
CCDC88C-205ENST00000553403 AGXT2Q9BYV1 514 aa31.23■■■□□ 2.59
CCDC88C-205ENST00000553403 ANKRD2Q9GZV1 360 aa31.23■■■□□ 2.59
CCDC88C-205ENST00000553403 LMBRD1Q9NUN5 540 aa31.23■■■□□ 2.59
CCDC88C-205ENST00000553403 STX6O43752 255 aa31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 SYT1P21579 422 aa31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 R3HDM1Q15032 1099 aaKnown RBP31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 TAF1P21675 1872 aa31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 A0A0G2JLW4 131 aa31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 TM4SF1P30408 202 aa31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 FOXD4L5Q5VV16 416 aaPredicted RBP31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 FOXD4L4Q8WXT5 416 aaPredicted RBP31.22■■■□□ 2.59
CCDC88C-205ENST00000553403 ZSCAN22P10073 491 aaPredicted RBP31.21■■■□□ 2.59
CCDC88C-205ENST00000553403 CAVIN4Q5BKX8 364 aa31.21■■■□□ 2.59
CCDC88C-205ENST00000553403 FBXL16Q8N461 479 aa31.21■■■□□ 2.59
CCDC88C-205ENST00000553403 NPHP1O15259 732 aa31.2■■■□□ 2.59
CCDC88C-205ENST00000553403 KLHL40Q2TBA0 621 aa31.2■■■□□ 2.59
CCDC88C-205ENST00000553403 ALX1Q15699 326 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 MAGEB6Q8N7X4 407 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 STRBPQ96SI9 672 aaKnown RBP31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 FGD1P98174 961 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 CNBD1Q8NA66 436 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 GTF3C6Q969F1 213 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 AIDAQ96BJ3 306 aa31.19■■■□□ 2.58
CCDC88C-205ENST00000553403 ZMYM6O95789 1325 aa31.18■■■□□ 2.58
CCDC88C-205ENST00000553403 ZNF213O14771 459 aa31.18■■■□□ 2.58
CCDC88C-205ENST00000553403 TNRC6CQ9HCJ0 1690 aaKnown RBP31.18■■■□□ 2.58
CCDC88C-205ENST00000553403 GYS1P13807 737 aa31.17■■■□□ 2.58
CCDC88C-205ENST00000553403 GYG1P46976 350 aa31.17■■■□□ 2.58
CCDC88C-205ENST00000553403 CCDC24Q8N4L8 307 aa31.17■■■□□ 2.58
CCDC88C-205ENST00000553403 BRF1Q92994 677 aa31.17■■■□□ 2.58
CCDC88C-205ENST00000553403 SEMA3EO15041 775 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 PLSCR1O15162 318 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 ZBTB22O15209 634 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 FBXO33Q7Z6M2 555 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 GZF1Q9H116 711 aaPredicted RBP31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 DENND2AQ9ULE3 1009 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 DDX49Q9Y6V7 483 aaKnown RBP31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 PDCP20941 246 aa31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 FAM84BQ96KN1 310 aaPredicted RBP31.16■■■□□ 2.58
CCDC88C-205ENST00000553403 WDR19Q8NEZ3 1342 aa31.15■■■□□ 2.58
CCDC88C-205ENST00000553403 PFKFB2O60825 505 aa31.15■■■□□ 2.58
CCDC88C-205ENST00000553403 PRPF40AO75400 957 aaKnown RBP31.15■■■□□ 2.58
CCDC88C-205ENST00000553403 ATP6V1DQ9Y5K8 247 aa31.15■■■□□ 2.58
CCDC88C-205ENST00000553403 PATL2C9JE40 543 aaKnown RBP31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 F13A1P00488 732 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 HAND2P61296 217 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 TXNRD1Q16881 649 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 VPS37DQ86XT2 251 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 NCOA7Q8NI08 942 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 LRRC2Q9BYS8 371 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 LRP2BPQ9P2M1 347 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 MTMR6Q9Y217 621 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 PDS5AQ29RF7 1337 aaKnown RBP31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 PNPLA7Q6ZV29 1317 aa31.14■■■□□ 2.58
CCDC88C-205ENST00000553403 GNAT2P19087 354 aa31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 STK3Q13188 491 aa31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 GRAPQ13588 217 aa31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 GRAPLQ8TC17 118 aaPredicted RBP31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 CHMP4CQ96CF2 233 aa31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 LLPHQ9BRT6 129 aaKnown RBP31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 MBD4O95243 580 aa31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 PRR5LQ6MZQ0 368 aa31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms