RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF532Q9HCE3 1301 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 PICALMQ13492 652 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 COPRSQ9NQ92 184 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 E7EWF7 191 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 PUM3Q15397 648 aaKnown RBP17.31■□□□□ 0.36
CUX1-214ENST00000550008 CAGE1Q8TC20 777 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 C17orf53Q8N3J3 647 aaPredicted RBP17.3■□□□□ 0.36
CUX1-214ENST00000550008 GPT2Q8TD30 523 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 KCNG4Q8TDN1 519 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 CCDC87Q9NVE4 849 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 CAMSAP1Q5T5Y3 1602 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 BAG3O95817 575 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 PI4K2BQ8TCG2 481 aa17.3■□□□□ 0.36
CUX1-214ENST00000550008 ZKSCAN5Q9Y2L8 839 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 LARGE1O95461 756 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 UVSSAQ2YD98 709 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 SPECC1Q5M775 1068 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 CNNM2Q9H8M5 875 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 ARGLU1Q9NWB6 273 aaPredicted RBP17.29■□□□□ 0.36
CUX1-214ENST00000550008 RIMBP2O15034 1052 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 PTPN12Q05209 780 aaKnown RBP17.29■□□□□ 0.36
CUX1-214ENST00000550008 ZNF287Q9HBT7 754 aa17.29■□□□□ 0.36
CUX1-214ENST00000550008 PTGS1P23219 599 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 EIF5P55010 431 aaKnown RBP17.28■□□□□ 0.36
CUX1-214ENST00000550008 SYNE4Q8N205 404 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 HSPD1P10809 573 aaKnown RBP17.28■□□□□ 0.36
CUX1-214ENST00000550008 LEO1Q8WVC0 666 aaPredicted RBP17.28■□□□□ 0.36
CUX1-214ENST00000550008 CMTR1Q8N1G2 835 aaKnown RBP17.28■□□□□ 0.36
CUX1-214ENST00000550008 SNAP23O00161 211 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 TSPY3P0CV98 308 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 TSPY8P0CW00 308 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 IDEP14735 1019 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 ZSWIM6Q9HCJ5 1215 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 MTMR6Q9Y217 621 aa17.28■□□□□ 0.36
CUX1-214ENST00000550008 CCDC70Q6NSX1 233 aa17.27■□□□□ 0.36
CUX1-214ENST00000550008 LDHCP07864 332 aa17.27■□□□□ 0.36
CUX1-214ENST00000550008 POLA2Q14181 598 aa17.27■□□□□ 0.36
CUX1-214ENST00000550008 HAUS7Q99871 368 aa17.27■□□□□ 0.36
CUX1-214ENST00000550008 TM6SF1Q9BZW5 370 aa17.27■□□□□ 0.36
CUX1-214ENST00000550008 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.27■□□□□ 0.365e-7■■□□□ 11.9
CUX1-214ENST00000550008 CCNL1Q9UK58 526 aaPredicted RBP17.27■□□□□ 0.36
CUX1-214ENST00000550008 CYP21A2P08686 494 aa17.27■□□□□ 0.35
CUX1-214ENST00000550008 UBA7P41226 1012 aa17.27■□□□□ 0.35
CUX1-214ENST00000550008 ENOX2Q16206 610 aaKnown RBP17.27■□□□□ 0.35
CUX1-214ENST00000550008 MAP4K1Q92918 833 aa17.27■□□□□ 0.35
CUX1-214ENST00000550008 DHX58Q96C10 678 aa17.27■□□□□ 0.35
CUX1-214ENST00000550008 DEF6Q9H4E7 631 aa17.27■□□□□ 0.35
CUX1-214ENST00000550008 ZNHIT6Q9NWK9 470 aaKnown RBP17.27■□□□□ 0.35
CUX1-214ENST00000550008 ANGEL1Q9UNK9 670 aaKnown RBP17.27■□□□□ 0.35
CUX1-214ENST00000550008 URI1O94763 535 aaPredicted RBP17.26■□□□□ 0.35
CUX1-214ENST00000550008 LIG1P18858 919 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 ZNF76P36508 570 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 PHKA1P46020 1223 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 CTSWP56202 376 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 NOLC1Q14978 699 aaKnown RBP eCLIP17.26■□□□□ 0.357e-6■■■□□ 16.5
CUX1-214ENST00000550008 BRINP3Q76B58 766 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 LPIN2Q92539 896 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 WDR17Q8IZU2 1322 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 KIF5BP33176 963 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 BCAMP50895 628 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 HEATR3Q7Z4Q2 680 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.26■□□□□ 0.35
CUX1-214ENST00000550008 ADGRB1O14514 1584 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 FGAP02671 866 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 GYG1P46976 350 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 STX17P56962 302 aa17.26■□□□□ 0.35
CUX1-214ENST00000550008 ADD1P35611 737 aaKnown RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 ZNF445P59923 1031 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 SPATA5Q8NB90 893 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 LAMC1P11047 1609 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 SF3B2Q13435 895 aaKnown RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 ARHGAP29Q52LW3 1261 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 ZBTB38Q8NAP3 1195 aaPredicted RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 PLIN2Q99541 437 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 CARD10Q9BWT7 1032 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 PIK3C2BO00750 1634 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 EPB41L2O43491 1005 aaKnown RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 RRP9O43818 475 aaKnown RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 SPTY2D1Q68D10 685 aaPredicted RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 PIGBQ92521 554 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 AATFQ9NY61 560 aaKnown RBP eCLIP17.25■□□□□ 0.353e-6■■■□□ 18.2
CUX1-214ENST00000550008 SAP30BPQ9UHR5 308 aaKnown RBP17.25■□□□□ 0.35
CUX1-214ENST00000550008 MYO3AQ8NEV4 1616 aa17.25■□□□□ 0.35
CUX1-214ENST00000550008 TMTC2Q8N394 836 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 CABP5Q9NP86 173 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 SKILP12757 684 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 NOM1Q5C9Z4 860 aaKnown RBP17.24■□□□□ 0.35
CUX1-214ENST00000550008 TTC6Q86TZ1 520 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 GPS2Q13227 327 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 GTF3C6Q969F1 213 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 UBASH3AP57075 661 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 SEC31BQ9NQW1 1179 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 BMP2KQ9NSY1 1161 aaPredicted RBP17.24■□□□□ 0.35
CUX1-214ENST00000550008 KCNJ14Q9UNX9 436 aa17.24■□□□□ 0.35
CUX1-214ENST00000550008 SDR42E1Q8WUS8 393 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 CLTCQ00610 1675 aaKnown RBP17.23■□□□□ 0.35
CUX1-214ENST00000550008 CCP110O43303 1012 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 PARP10Q53GL7 1025 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 MAP7D2Q96T17 732 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 ZMYND15Q9H091 742 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms