RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 VPS37DQ86XT2 251 aa11.74□□□□□ -0.53
YBX3-218ENST00000546298 ANKRD44Q8N8A2 993 aa11.74□□□□□ -0.53
YBX3-218ENST00000546298 MTMR14Q8NCE2 650 aa11.74□□□□□ -0.53
YBX3-218ENST00000546298 TDRD7Q8NHU6 1098 aaKnown RBP11.74□□□□□ -0.53
YBX3-218ENST00000546298 ZBED3Q96IU2 234 aaPredicted RBP11.74□□□□□ -0.53
YBX3-218ENST00000546298 PUS3Q9BZE2 481 aaKnown RBP11.74□□□□□ -0.53
YBX3-218ENST00000546298 SLC10A3P09131 477 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 CAVIN4Q5BKX8 364 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 FAM205AQ6ZU69 1335 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 ARMC9Q7Z3E5 817 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 CERS5Q8N5B7 392 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 FAM84BQ96KN1 310 aaPredicted RBP11.73□□□□□ -0.53
YBX3-218ENST00000546298 PPP2R3BQ9Y5P8 575 aa11.73□□□□□ -0.53
YBX3-218ENST00000546298 CACNA1FO60840 1977 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 F8W031 263 aaPredicted RBP11.72□□□□□ -0.53
YBX3-218ENST00000546298 PDE8BO95263 885 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 UBTFL1P0CB47 393 aaPredicted RBP11.72□□□□□ -0.53
YBX3-218ENST00000546298 GYG1P46976 350 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 CFAP100Q494V2 611 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 MFSD14BQ5SR56 506 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 PRAMEF18Q5VWM3 479 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 ZIC5Q96T25 663 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 SAGE1Q9NXZ1 904 aa11.72□□□□□ -0.53
YBX3-218ENST00000546298 NOB1Q9ULX3 412 aaKnown RBP11.72□□□□□ -0.53
YBX3-218ENST00000546298 SCN9AQ15858 1988 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 UBE2Q2LH0YL09 131 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 FRAT2O75474 233 aaPredicted RBP11.71□□□□□ -0.53
YBX3-218ENST00000546298 IFIT1P09914 478 aaKnown RBP11.71□□□□□ -0.53
YBX3-218ENST00000546298 RBM5P52756 815 aaKnown RBP eCLIP11.71□□□□□ -0.53
YBX3-218ENST00000546298 LRRC24Q50LG9 513 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 FBXO33Q7Z6M2 555 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 TBC1D22AQ8WUA7 517 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 ARHGAP45Q92619 1136 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 DEFB129Q9H1M3 183 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 TSKSQ9UJT2 592 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 FBXO3Q9UK99 471 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 SCAF8Q9UPN6 1271 aaKnown RBP11.71□□□□□ -0.53
YBX3-218ENST00000546298 JAG2Q9Y219 1238 aa11.71□□□□□ -0.53
YBX3-218ENST00000546298 KIF16BQ96L93 1317 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 SPDYE2BA6NHP3 402 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 EYA2O00167 538 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 IPO8O15397 1037 aaKnown RBP11.7□□□□□ -0.54
YBX3-218ENST00000546298 SPDYE6P0CI01 402 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 RARSP54136 660 aaKnown RBP11.7□□□□□ -0.54
YBX3-218ENST00000546298 TNFAIP1Q13829 316 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 PUM3Q15397 648 aaKnown RBP11.7□□□□□ -0.54
YBX3-218ENST00000546298 SUPT20HL1Q3ZLR7 823 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 RASAL3Q86YV0 1011 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 CSRNP1Q96S65 589 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 SERPINA10Q9UK55 444 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 TTF2Q9UNY4 1162 aaKnown RBP11.7□□□□□ -0.54
YBX3-218ENST00000546298 TRPM7Q96QT4 1865 aa11.7□□□□□ -0.54
YBX3-218ENST00000546298 PPP1R12BO60237 982 aaPredicted RBP11.69□□□□□ -0.54
YBX3-218ENST00000546298 MOB2Q70IA6 237 aa11.69□□□□□ -0.54
YBX3-218ENST00000546298 ABHD8Q96I13 439 aa11.69□□□□□ -0.54
YBX3-218ENST00000546298 PRMT6Q96LA8 375 aaPredicted RBP11.69□□□□□ -0.54
YBX3-218ENST00000546298 VEZTQ9HBM0 779 aa11.69□□□□□ -0.54
YBX3-218ENST00000546298 RNF186Q9NXI6 227 aa11.69□□□□□ -0.54
YBX3-218ENST00000546298 MYH3P11055 1940 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 CLRN2A0PK11 232 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 UNCXA6NJT0 531 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 TRPA1O75762 1119 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 SLC5A1P13866 664 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 RFX5P48382 616 aaPredicted RBP11.68□□□□□ -0.54
YBX3-218ENST00000546298 HDLBPQ00341 1268 aaKnown RBP11.68□□□□□ -0.54
YBX3-218ENST00000546298 CHAF1AQ13111 956 aaPredicted RBP11.68□□□□□ -0.54
YBX3-218ENST00000546298 PRKG1Q13976 671 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 LDLRAD1Q5T700 205 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 VGLL2Q8N8G2 317 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 KLHDC4Q8TBB5 520 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 LPIN2Q92539 896 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 CEP126Q9P2H0 1117 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 ANGEL1Q9UNK9 670 aaKnown RBP11.68□□□□□ -0.54
YBX3-218ENST00000546298 SUGT1Q9Y2Z0 365 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 COL1A1P02452 1464 aaPredicted RBP11.68□□□□□ -0.54
YBX3-218ENST00000546298 THSD7BQ9C0I4 1608 aa11.68□□□□□ -0.54
YBX3-218ENST00000546298 CIAO1O76071 339 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 GNAI3P08754 354 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 FGFR2P21802 821 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 TNNI2P48788 182 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 BCAMP50895 628 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 PTPN12Q05209 780 aaKnown RBP11.67□□□□□ -0.54
YBX3-218ENST00000546298 SREBF2Q12772 1141 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 MAP3K11Q16584 847 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 DZIP1LQ8IYY4 767 aaKnown RBP11.67□□□□□ -0.54
YBX3-218ENST00000546298 SLC10A4Q96EP9 437 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 MRIQ9BWK5 157 aa11.67□□□□□ -0.54
YBX3-218ENST00000546298 GNL3LQ9NVN8 582 aaKnown RBP11.67□□□□□ -0.54
YBX3-218ENST00000546298 ZNF70Q9UC06 446 aaPredicted RBP11.67□□□□□ -0.54
YBX3-218ENST00000546298 IQSEC3Q9UPP2 1182 aaPredicted RBP11.67□□□□□ -0.54
YBX3-218ENST00000546298 MAST3O60307 1309 aa11.66□□□□□ -0.54
YBX3-218ENST00000546298 IL15P40933 162 aaPredicted RBP11.66□□□□□ -0.54
YBX3-218ENST00000546298 CRKP46108 304 aa11.66□□□□□ -0.54
YBX3-218ENST00000546298 IREB2P48200 963 aaKnown RBP11.66□□□□□ -0.54
YBX3-218ENST00000546298 RASA3Q14644 834 aa11.66□□□□□ -0.54
YBX3-218ENST00000546298 INTS3Q68E01 1043 aaKnown RBP11.66□□□□□ -0.54
YBX3-218ENST00000546298 WDR66Q8TBY9 1149 aa11.66□□□□□ -0.54
YBX3-218ENST00000546298 TEKT1Q969V4 418 aa11.66□□□□□ -0.54
YBX3-218ENST00000546298 PCDHAC2Q9Y5I4 1007 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms