RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ZNF646O15015 1829 aaPredicted RBP19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 G3V3G9 751 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 PPIP5K2O43314 1243 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 ZFYP08048 801 aaPredicted RBP19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 SDSP20132 328 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 IARSP41252 1262 aaKnown RBP19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 DCAF8Q5TAQ9 597 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 SPTY2D1Q68D10 685 aaPredicted RBP19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 ZSCAN25Q6NSZ9 544 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 CASC1Q6TDU7 716 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 KBTBD3Q8NAB2 608 aa19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.43■□□□□ 0.73e-7■□□□□ 10.5
PRPF40A-212ENST00000545856 ZNF219Q9P2Y4 722 aaPredicted RBP19.43■□□□□ 0.7
PRPF40A-212ENST00000545856 TRIM6-TRIM34B2RNG4 842 aa19.42■□□□□ 0.7
PRPF40A-212ENST00000545856 NFKBIEO00221 500 aa19.42■□□□□ 0.7
PRPF40A-212ENST00000545856 GRIN3BO60391 1043 aa19.42■□□□□ 0.7
PRPF40A-212ENST00000545856 TSHZ3Q63HK5 1081 aa19.42■□□□□ 0.7
PRPF40A-212ENST00000545856 CDC45O75419 566 aa19.41■□□□□ 0.7
PRPF40A-212ENST00000545856 MMP14P50281 582 aa19.41■□□□□ 0.7
PRPF40A-212ENST00000545856 DNAJC2Q99543 621 aaKnown RBP19.41■□□□□ 0.7
PRPF40A-212ENST00000545856 COL1A1P02452 1464 aaPredicted RBP19.41■□□□□ 0.7
PRPF40A-212ENST00000545856 MYO5AQ9Y4I1 1855 aaKnown RBP19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 SCN9AQ15858 1988 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 STRIP1Q5VSL9 837 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 SKAP1Q86WV1 359 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 LARGE2Q8N3Y3 721 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 JDP2Q8WYK2 163 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 MYO3BQ8WXR4 1341 aa19.4■□□□□ 0.7
PRPF40A-212ENST00000545856 WTIPA6NIX2 430 aaPredicted RBP19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 GOLIM4O00461 696 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 ECE2O60344 883 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 ZAP70P43403 619 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 MAP3K12Q12852 859 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 SCARF1Q14162 830 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 SLC51AQ86UW1 340 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 NIM1KQ8IY84 436 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 RAD50Q92878 1312 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 FSD1Q9BTV5 496 aa19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 ZC3H4Q9UPT8 1303 aaKnown RBP19.39■□□□□ 0.69
PRPF40A-212ENST00000545856 MAST3O60307 1309 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 RIMBP2O15034 1052 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 CYP2E1P05181 493 aaPredicted RBP19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 LMNB1P20700 586 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 AOC3Q16853 763 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 RILPL2Q969X0 211 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 ZNRF3Q9ULT6 936 aa19.38■□□□□ 0.69
PRPF40A-212ENST00000545856 CERS3Q8IU89 383 aa19.37■□□□□ 0.69
PRPF40A-212ENST00000545856 RUFY2Q8WXA3 655 aa19.37■□□□□ 0.69
PRPF40A-212ENST00000545856 GPR101Q96P66 508 aaPredicted RBP19.37■□□□□ 0.69
PRPF40A-212ENST00000545856 TIAM2Q8IVF5 1701 aa19.37■□□□□ 0.69
PRPF40A-212ENST00000545856 SLF2Q8IX21 1173 aa19.36■□□□□ 0.69
PRPF40A-212ENST00000545856 ZNF277Q9NRM2 450 aaPredicted RBP19.36■□□□□ 0.69
PRPF40A-212ENST00000545856 GOLGB1Q14789 3259 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 USP17L3A6NCW0 530 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 USP17L4A6NCW7 530 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 EPB41L2O43491 1005 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 UBE3CQ15386 1083 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 ERICH6Q7L0X2 663 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 USP17L1Q7RTZ2 530 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 SNRKQ9NRH2 765 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 DIAPH3Q9NSV4 1193 aa19.35■□□□□ 0.69
PRPF40A-212ENST00000545856 GSTO1P78417 241 aa19.34■□□□□ 0.69
PRPF40A-212ENST00000545856 TTLL5Q6EMB2 1281 aa19.34■□□□□ 0.69
PRPF40A-212ENST00000545856 ARHGAP27Q6ZUM4 889 aa19.34■□□□□ 0.69
PRPF40A-212ENST00000545856 DBNDD1Q9H9R9 158 aa19.34■□□□□ 0.69
PRPF40A-212ENST00000545856 LRP2BPQ9P2M1 347 aa19.34■□□□□ 0.69
PRPF40A-212ENST00000545856 SRCAPQ6ZRS2 3230 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 MYH2Q9UKX2 1941 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 MFAP1P55081 439 aaKnown RBP19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 DOK7Q18PE1 504 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 MFSD14BQ5SR56 506 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 PI16Q6UXB8 463 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 MRIQ9BWK5 157 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 COL4A5P29400 1685 aa19.33■□□□□ 0.69
PRPF40A-212ENST00000545856 RNF113AO15541 343 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 LDHBP07195 334 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 YBX3P16989 372 aaKnown RBP eCLIP19.32■□□□□ 0.681e-8■■■■■ 42.6
PRPF40A-212ENST00000545856 CHMLP26374 656 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 GTF2IP78347 998 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 HDLBPQ00341 1268 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 CHAF1AQ13111 956 aaPredicted RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 TNIP1Q15025 636 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 ANTXR1Q9H6X2 564 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 HELLSQ9NRZ9 838 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 IQSEC3Q9UPP2 1182 aaPredicted RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 FZD9O00144 591 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 IDH1O75874 414 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 LDHCP07864 332 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 RPS12P25398 132 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 ADD2P35612 726 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 GPR162Q16538 588 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 DACT2Q5SW24 774 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 AGBL3Q8NEM8 1001 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 APPBP2Q92624 585 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 PIH1D3Q9NQM4 214 aaKnown RBP19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 ABCF2Q9UG63 623 aa19.32■□□□□ 0.68
PRPF40A-212ENST00000545856 DCAF8L1A6NGE4 600 aa19.31■□□□□ 0.68
PRPF40A-212ENST00000545856 MAP4K4O95819 1239 aaPredicted RBP19.31■□□□□ 0.68
PRPF40A-212ENST00000545856 VIL1P09327 827 aaKnown RBP19.31■□□□□ 0.68
PRPF40A-212ENST00000545856 EIF6P56537 245 aaKnown RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms