RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MPHOSPH8Q99549 860 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 ANKRD2Q9GZV1 360 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 PCDHB8Q9UN66 801 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 PCDHB13Q9Y5F0 798 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 ZNF804BA4D1E1 1349 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 POLR2AP24928 1970 aaKnown RBP10.78□□□□□ -0.68
USP28-215ENST00000545608 SNAP23O00161 211 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 FOXO4P98177 505 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 CHRNDQ07001 517 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 STRIP1Q5VSL9 837 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 PRAMEF18Q5VWM3 479 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 FAM9BQ8IZU0 186 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 PITPNM2Q9BZ72 1349 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 ANKRD18BA2A2Z9 1011 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 WNT10BO00744 389 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 TAF5LO75529 589 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 SLC10A3P09131 477 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 PSEN1P49768 467 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 GTF2IP78347 998 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 EPHA10Q5JZY3 1008 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 TTLL5Q6EMB2 1281 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 MOB2Q70IA6 237 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 HELBQ8NG08 1087 aaPredicted RBP10.77□□□□□ -0.69
USP28-215ENST00000545608 CSRNP1Q96S65 589 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 MCOLN1Q9GZU1 580 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 WDR70Q9NW82 654 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 CCDC85CA6NKD9 419 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 UBE2Q2LH0YL09 131 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 KCNJ4P48050 445 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 RASAL3Q86YV0 1011 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 KIAA0825Q8IV33 1275 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 OGFOD1Q8N543 542 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 CD209Q9NNX6 404 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 RNF186Q9NXI6 227 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 MYO3BQ8WXR4 1341 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 IRS2Q9Y4H2 1338 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 TRPA1O75762 1119 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 SASH1O94885 1247 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 FKBP1BP68106 108 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 IFIT5Q13325 482 aaKnown RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 DGKZQ13574 1117 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 LMBR1LQ6UX01 489 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 ZBED3Q96IU2 234 aaPredicted RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 ZNF594Q96JF6 807 aaPredicted RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 CHMP3Q9Y3E7 222 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 GRM8O00222 908 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 C15orf52Q6ZUT6 534 aaKnown RBP10.74□□□□□ -0.69
USP28-215ENST00000545608 CERS5Q8N5B7 392 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 SAGE1Q9NXZ1 904 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 HDAC9Q9UKV0 1011 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 PSME4Q14997 1843 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 PLIN1O60240 522 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 ALDH1L1O75891 902 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 MMP14P50281 582 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 FXR2P51116 673 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP28-215ENST00000545608 TTLL12Q14166 644 aaPredicted RBP10.73□□□□□ -0.69
USP28-215ENST00000545608 SLC4A10Q6U841 1118 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 LDHAL6AQ6ZMR3 332 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 C9orf78Q9NZ63 289 aaPredicted RBP10.73□□□□□ -0.69
USP28-215ENST00000545608 PCDHAC2Q9Y5I4 1007 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 MYH3P11055 1940 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 CASP8AP2Q9UKL3 1982 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 SPEF2Q9C093 1822 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 IL1R1P14778 569 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 RGS19P49795 217 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 PRKG1Q13976 671 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 CCDC57Q2TAC2 916 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 KAZALD1Q96I82 304 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 SUCLG2Q96I99 432 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 SRCIN1Q9C0H9 1055 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 CNNM1Q9NRU3 951 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 JAG2Q9Y219 1238 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 ZNF521Q96K83 1311 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 F8W031 263 aaPredicted RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 NF2P35240 595 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 PTPN12Q05209 780 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 DLGAP5Q15398 846 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 TAF7LQ5H9L4 462 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 ZNF804AQ7Z570 1209 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 APOBEC3FQ8IUX4 373 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 PUS3Q9BZE2 481 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 FZD1Q9UP38 647 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 ZNF646O15015 1829 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 PAPPA2Q9BXP8 1791 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 AOX1Q06278 1338 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 NBPF7P0C2Y1 421 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 CFAP100Q494V2 611 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 ARMC9Q7Z3E5 817 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 MTMR14Q8NCE2 650 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 PRMT6Q96LA8 375 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 DEFB129Q9H1M3 183 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 UTYO14607 1347 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 CLRN2A0PK11 232 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 TBC1D8O95759 1140 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 TM4SF4P48230 202 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 FKBP1AP62942 108 aaKnown RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 MLLT1Q03111 559 aaPredicted RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 LDLRAD1Q5T700 205 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms