RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 FAM84BQ96KN1 310 aaPredicted RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 GBA2Q9HCG7 927 aaPredicted RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 CIAO1O76071 339 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 FKBP1BP68106 108 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 MAPK8IP2Q13387 824 aaPredicted RBP14.44□□□□□ -0.1
RTN3-209ENST00000538995 PUM3Q15397 648 aaKnown RBP14.44□□□□□ -0.1
RTN3-209ENST00000538995 NBPF9Q3BBW0 867 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 CYP4F22Q6NT55 531 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 C2orf69Q8N8R5 385 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 MTMR14Q8NCE2 650 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 KLHDC4Q8TBB5 520 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 AIDAQ96BJ3 306 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 CDCA5Q96FF9 252 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 MEIS3Q99687 375 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 WBP1LQ9NX94 342 aa14.44□□□□□ -0.1
RTN3-209ENST00000538995 LRRFIP2Q9Y608 721 aaKnown RBP14.44□□□□□ -0.1
RTN3-209ENST00000538995 BCAR3O75815 825 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 MAP2K2P36507 400 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 GYG1P46976 350 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 HUNKP57058 714 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 CAVIN4Q5BKX8 364 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 FBXO33Q7Z6M2 555 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 VPS37DQ86XT2 251 aa14.43□□□□□ -0.1
RTN3-209ENST00000538995 APOBEC3FQ8IUX4 373 aaKnown RBP14.43□□□□□ -0.1
RTN3-209ENST00000538995 COL1A1P02452 1464 aaPredicted RBP14.43□□□□□ -0.1
RTN3-209ENST00000538995 IFIT1P09914 478 aaKnown RBP14.42□□□□□ -0.1
RTN3-209ENST00000538995 FGFR2P21802 821 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 MTX1Q13505 466 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 DLGAP5Q15398 846 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 MFSD14BQ5SR56 506 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 ZKSCAN2Q63HK3 967 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 DLK2Q6UY11 383 aa14.42□□□□□ -0.1
RTN3-209ENST00000538995 FRAT1Q92837 279 aaPredicted RBP14.42□□□□□ -0.1
RTN3-209ENST00000538995 SLC5A1P13866 664 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 NOGQ13253 232 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 ATG9AQ7Z3C6 839 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 TBC1D22AQ8WUA7 517 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 LPIN2Q92539 896 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 COPRSQ9NQ92 184 aa14.41□□□□□ -0.1
RTN3-209ENST00000538995 PAPPA2Q9BXP8 1791 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 SPDYE2BA6NHP3 402 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 FOXN1O15353 648 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 MYO1BO43795 1136 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 SPDYE6P0CI01 402 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 IL15P40933 162 aaPredicted RBP14.4□□□□□ -0.1
RTN3-209ENST00000538995 CTCFP49711 727 aaPredicted RBP14.4□□□□□ -0.1
RTN3-209ENST00000538995 SERPINA10Q9UK55 444 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 PPP2R3BQ9Y5P8 575 aa14.4□□□□□ -0.1
RTN3-209ENST00000538995 ARAP2Q8WZ64 1704 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 GNAI2P04899 355 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 NF2P35240 595 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 GRM1Q13255 1194 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 CFAP100Q494V2 611 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 RGMBQ6NW40 437 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 CCDC102AQ96A19 550 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 BEGAINQ9BUH8 593 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 PRDM10Q9NQV6 1147 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 CEP126Q9P2H0 1117 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 JAG2Q9Y219 1238 aa14.39□□□□□ -0.11
RTN3-209ENST00000538995 F8W031 263 aaPredicted RBP14.38□□□□□ -0.11
RTN3-209ENST00000538995 ZBTB22O15209 634 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 SRGAP3O43295 1099 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 CA12O43570 354 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 AOC2O75106 756 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 FRAT2O75474 233 aaPredicted RBP14.38□□□□□ -0.11
RTN3-209ENST00000538995 BCAMP50895 628 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 ATP2B3Q16720 1220 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 COL13A1Q5TAT6 717 aaPredicted RBP14.38□□□□□ -0.11
RTN3-209ENST00000538995 CLUAP1Q96AJ1 413 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 SIL1Q9H173 461 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 SUGT1Q9Y2Z0 365 aa14.38□□□□□ -0.11
RTN3-209ENST00000538995 POLR2AP24928 1970 aaKnown RBP14.38□□□□□ -0.11
RTN3-209ENST00000538995 HDLBPQ00341 1268 aaKnown RBP14.37□□□□□ -0.11
RTN3-209ENST00000538995 FTSJ3Q8IY81 847 aaKnown RBP14.37□□□□□ -0.11
RTN3-209ENST00000538995 TMEM57Q8N5G2 664 aa14.37□□□□□ -0.11
RTN3-209ENST00000538995 TTF2Q9UNY4 1162 aaKnown RBP14.37□□□□□ -0.11
RTN3-209ENST00000538995 PA2G4Q9UQ80 394 aaKnown RBP14.37□□□□□ -0.11
RTN3-209ENST00000538995 TNNQ9UQP3 1299 aa14.37□□□□□ -0.11
RTN3-209ENST00000538995 MAST3O60307 1309 aa14.37□□□□□ -0.11
RTN3-209ENST00000538995 FAM155AB1AL88 458 aaPredicted RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 SLC10A3P09131 477 aa14.36□□□□□ -0.11
RTN3-209ENST00000538995 ZNF157P51786 506 aaPredicted RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 CHAF1AQ13111 956 aaPredicted RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 PRMT6Q96LA8 375 aaPredicted RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 DEFB129Q9H1M3 183 aa14.36□□□□□ -0.11
RTN3-209ENST00000538995 GNL3LQ9NVN8 582 aaKnown RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 IQSEC3Q9UPP2 1182 aaPredicted RBP14.36□□□□□ -0.11
RTN3-209ENST00000538995 SEMA3EO15041 775 aa14.35□□□□□ -0.11
RTN3-209ENST00000538995 HSPA8P11142 646 aaKnown RBP14.35□□□□□ -0.11
RTN3-209ENST00000538995 RBM5P52756 815 aaKnown RBP eCLIP14.35□□□□□ -0.11
RTN3-209ENST00000538995 TNFAIP1Q13829 316 aa14.35□□□□□ -0.11
RTN3-209ENST00000538995 SPDYE2Q495Y8 402 aa14.35□□□□□ -0.11
RTN3-209ENST00000538995 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
RTN3-209ENST00000538995 WDR66Q8TBY9 1149 aa14.35□□□□□ -0.11
RTN3-209ENST00000538995 MRIQ9BWK5 157 aa14.35□□□□□ -0.11
RTN3-209ENST00000538995 SCAF8Q9UPN6 1271 aaKnown RBP14.35□□□□□ -0.11
RTN3-209ENST00000538995 CLRN2A0PK11 232 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 CRKP46108 304 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 PRAMEF18Q5VWM3 479 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 ARMC9Q7Z3E5 817 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms