RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 GSK3AP49840 483 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 FCGRTP55899 365 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 TRIM28Q13263 835 aaKnown RBP7.59□□□□□ -1.19
CD44-215ENST00000525241 ZNF326Q5BKZ1 582 aaKnown RBP7.59□□□□□ -1.19
CD44-215ENST00000525241 TMC4Q7Z404 712 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 FMR1NBQ8N0W7 255 aaPredicted RBP7.59□□□□□ -1.19
CD44-215ENST00000525241 C3orf58Q8NDZ4 430 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 FOXD4L4Q8WXT5 416 aaPredicted RBP7.59□□□□□ -1.19
CD44-215ENST00000525241 FAM161BQ96MY7 647 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 ZNF576Q9H609 170 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 PPP4R2Q9NY27 417 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 AK5Q9Y6K8 562 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 RNF225M0QZC1 329 aaPredicted RBP7.58□□□□□ -1.2
CD44-215ENST00000525241 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
CD44-215ENST00000525241 FSCN2O14926 492 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 CABP4P57796 275 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 RAC1P63000 192 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 XPCQ01831 940 aaPredicted RBP7.58□□□□□ -1.2
CD44-215ENST00000525241 KCNMA1Q12791 1236 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 ZNF423Q2M1K9 1284 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 FBXO11Q86XK2 927 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 GALNT11Q8NCW6 608 aa7.58□□□□□ -1.2
CD44-215ENST00000525241 CLEC4MQ9H2X3 399 aaPredicted RBP7.58□□□□□ -1.2
CD44-215ENST00000525241 SRA1Q9HD15 236 aaKnown RBP7.58□□□□□ -1.2
CD44-215ENST00000525241 ESRRAP11474 423 aaPredicted RBP7.57□□□□□ -1.2
CD44-215ENST00000525241 XRCC5P13010 732 aaKnown RBP7.57□□□□□ -1.2
CD44-215ENST00000525241 PCDH1Q08174 1060 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 PSMD2Q13200 908 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 IKBKEQ14164 716 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 PRRT3Q5FWE3 981 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 HGSNATQ68CP4 663 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 DTHD1Q6ZMT9 781 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 MAP4K3Q8IVH8 894 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 WNT8BQ93098 351 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 FAM8A1Q9UBU6 413 aa7.57□□□□□ -1.2
CD44-215ENST00000525241 DLL1O00548 723 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 SPATA31C1P0DKV0 1188 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 ELNP15502 786 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 EIF4BP23588 611 aaKnown RBP7.56□□□□□ -1.2
CD44-215ENST00000525241 GSTT1P30711 240 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 PIP4K2BP78356 416 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 RPS26P11Q5JNZ5 115 aaPredicted RBP7.56□□□□□ -1.2
CD44-215ENST00000525241 FAM117BQ6P1L5 589 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 KLHDC7BQ96G42 594 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 CARD10Q9BWT7 1032 aa7.56□□□□□ -1.2
CD44-215ENST00000525241 USP17L7P0C7H9 530 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 RASSF7Q02833 373 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 FAAP100Q0VG06 881 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 GRIK4Q16099 956 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 ALYREFQ86V81 257 aaKnown RBP7.55□□□□□ -1.2
CD44-215ENST00000525241 KLHL23Q8NBE8 558 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 DCAF5Q96JK2 942 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 OSGEPQ9NPF4 335 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 SEC31BQ9NQW1 1179 aa7.55□□□□□ -1.2
CD44-215ENST00000525241 SORBS3O60504 671 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 B3GALT4O96024 378 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 CTSHP09668 335 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 C19orf57Q0VDD7 668 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 SLC7A3Q8WY07 619 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 SOX17Q9H6I2 414 aaPredicted RBP7.54□□□□□ -1.2
CD44-215ENST00000525241 ZFYVE1Q9HBF4 777 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 KCNK4Q9NYG8 393 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 AKAP2Q9Y2D5 859 aa7.54□□□□□ -1.2
CD44-215ENST00000525241 KRBA1A5PL33 1030 aa7.53□□□□□ -1.2
CD44-215ENST00000525241 SELPP16109 830 aa7.53□□□□□ -1.2
CD44-215ENST00000525241 CD68P34810 354 aaPredicted RBP7.53□□□□□ -1.2
CD44-215ENST00000525241 MRPL58Q14197 206 aaKnown RBP7.53□□□□□ -1.2
CD44-215ENST00000525241 FOXD4L6Q3SYB3 417 aaPredicted RBP7.53□□□□□ -1.2
CD44-215ENST00000525241 SHISA2Q6UWI4 295 aa7.53□□□□□ -1.2
CD44-215ENST00000525241 FOXD4L3Q6VB84 417 aaPredicted RBP7.53□□□□□ -1.2
CD44-215ENST00000525241 ANKRD24Q8TF21 1146 aa7.53□□□□□ -1.2
CD44-215ENST00000525241 PPM1HQ9ULR3 514 aa7.53□□□□□ -1.2
CD44-215ENST00000525241 DDX3YO15523 660 aaKnown RBP7.52□□□□□ -1.21
CD44-215ENST00000525241 ADAM11O75078 769 aa7.52□□□□□ -1.21
CD44-215ENST00000525241 ARL4DP49703 201 aa7.52□□□□□ -1.21
CD44-215ENST00000525241 SUZ12Q15022 739 aaKnown RBP7.52□□□□□ -1.21
CD44-215ENST00000525241 IGF2-ASQ6U949 168 aa7.52□□□□□ -1.21
CD44-215ENST00000525241 MRS2Q9HD23 443 aa7.52□□□□□ -1.21
CD44-215ENST00000525241 ZNF157P51786 506 aaPredicted RBP7.51□□□□□ -1.21
CD44-215ENST00000525241 GSTM4Q03013 218 aa7.51□□□□□ -1.21
CD44-215ENST00000525241 DCAF11Q8TEB1 546 aa7.51□□□□□ -1.21
CD44-215ENST00000525241 LENG1Q96BZ8 264 aaPredicted RBP7.51□□□□□ -1.21
CD44-215ENST00000525241 NRSN2Q9GZP1 204 aa7.51□□□□□ -1.21
CD44-215ENST00000525241 VTI1BQ9UEU0 232 aa7.51□□□□□ -1.21
CD44-215ENST00000525241 UNCXA6NJT0 531 aa7.5□□□□□ -1.21
CD44-215ENST00000525241 MEI1Q5TIA1 1274 aa7.5□□□□□ -1.21
CD44-215ENST00000525241 CRELD1Q96HD1 420 aa7.5□□□□□ -1.21
CD44-215ENST00000525241 TRIM56Q9BRZ2 755 aaKnown RBP7.5□□□□□ -1.21
CD44-215ENST00000525241 TMEM39AQ9NV64 488 aa7.5□□□□□ -1.21
CD44-215ENST00000525241 FBXO24O75426 580 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 WISP1O95388 367 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 GDF11O95390 407 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 APBA3O96018 575 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 NLRP12P59046 1061 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 TPTE2Q6XPS3 522 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 NECAB3Q96P71 396 aaPredicted RBP7.49□□□□□ -1.21
CD44-215ENST00000525241 NACC1Q96RE7 527 aa7.49□□□□□ -1.21
CD44-215ENST00000525241 GPN3Q9UHW5 284 aaPredicted RBP7.49□□□□□ -1.21
CD44-215ENST00000525241 USP31Q70CQ4 1352 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 C9orf172C9J069 976 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms