RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 NEK10Q6ZWH5 1172 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 KRT77Q7Z794 578 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 KIAA0825Q8IV33 1275 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 MIEF2Q96C03 454 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 EME2A4GXA9 379 aaPredicted RBP8.4□□□□□ -1.06
NIPBL-208ENST00000514335 SMUG1Q53HV7 270 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 PROSER2Q86WR7 435 aaPredicted RBP8.4□□□□□ -1.06
NIPBL-208ENST00000514335 HELQQ8TDG4 1101 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 ZFPM2Q8WW38 1151 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 XPO4Q9C0E2 1151 aaKnown RBP8.4□□□□□ -1.06
NIPBL-208ENST00000514335 PLSCR2Q9NRY7 297 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 MAPK8IP1Q9UQF2 711 aa8.4□□□□□ -1.06
NIPBL-208ENST00000514335 A0A1B0GUL7 405 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 LDHAP00338 332 aaKnown RBP8.4□□□□□ -1.07
NIPBL-208ENST00000514335 PIK3CAP42336 1068 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 GOLGA2Q08379 1002 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 CCDC174Q6PII3 467 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 PACS2Q86VP3 889 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.07
NIPBL-208ENST00000514335 TMEM87BQ96K49 555 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 RBSNQ9H1K0 784 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 ZMAT5Q9UDW3 170 aaKnown RBP8.4□□□□□ -1.07
NIPBL-208ENST00000514335 CCNB3Q8WWL7 1395 aa8.4□□□□□ -1.07
NIPBL-208ENST00000514335 SLC26A4O43511 780 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 IQCB1Q15051 598 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 FILIP1Q7Z7B0 1213 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 LILRB2Q8N423 598 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 EPAS1Q99814 870 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 IER2Q9BTL4 223 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 PLEKHG3A1L390 1219 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 RNASEH2AO75792 299 aaKnown RBP8.39□□□□□ -1.07
NIPBL-208ENST00000514335 PDE4BQ07343 736 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 MPP3Q13368 585 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 VPS52Q8N1B4 723 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 SVIPQ8NHG7 77 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 ATG3Q9NT62 314 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 BARX2Q9UMQ3 279 aaPredicted RBP8.39□□□□□ -1.07
NIPBL-208ENST00000514335 MRFAP1Q9Y605 127 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 IKBKGQ9Y6K9 419 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 RGPD1P0DJD0 1748 aa8.39□□□□□ -1.07
NIPBL-208ENST00000514335 B3GALNT1O75752 331 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 DBN1Q16643 649 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 TTC31Q49AM3 519 aaPredicted RBP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 C14orf80Q86SX3 495 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 CCAR1Q8IX12 1150 aaKnown RBP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 RNF214Q8ND24 703 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 FLCNQ8NFG4 579 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 SNX21Q969T3 373 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 RBM17Q96I25 401 aaKnown RBP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 CDHR1Q96JP9 859 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 TCEAL9Q9UHQ7 104 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 ZNF652Q9Y2D9 606 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 CDC42BPGQ6DT37 1551 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 PDXDC1Q6P996 788 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 OLFML1Q6UWY5 402 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 UNC5DQ6UXZ4 953 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 SYT10Q6XYQ8 523 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 CCDC65Q8IXS2 484 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 RPAP2Q8IXW5 612 aaPredicted RBP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 TBC1D31Q96DN5 1066 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 LCMT1Q9UIC8 334 aa8.38□□□□□ -1.07
NIPBL-208ENST00000514335 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.38□□□□□ -1.07
NIPBL-208ENST00000514335 TMEM2Q9UHN6 1383 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 CYP1A2P05177 515 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 TSPAN7P41732 249 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 CCNHP51946 323 aaPredicted RBP8.37□□□□□ -1.07
NIPBL-208ENST00000514335 TAGLNQ01995 201 aaKnown RBP8.37□□□□□ -1.07
NIPBL-208ENST00000514335 STK11IPQ8N1F8 1099 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 GOLGA1Q92805 767 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 TBC1D20Q96BZ9 403 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 SLC39A13Q96H72 371 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 SCLT1Q96NL6 688 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 TRPV5Q9NQA5 729 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 DCAF16Q9NXF7 216 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 DISP2A7MBM2 1401 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 SNUPNO95149 360 aaKnown RBP8.37□□□□□ -1.07
NIPBL-208ENST00000514335 GPSM2P81274 684 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 GRIK3Q13003 919 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 RBBP5Q15291 538 aaKnown RBP8.37□□□□□ -1.07
NIPBL-208ENST00000514335 MSL1Q68DK7 614 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 CCDC102AQ96A19 550 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 MAP3K14Q99558 947 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.37□□□□□ -1.07
NIPBL-208ENST00000514335 CLIP2Q9UDT6 1046 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 MST1RQ04912 1400 aa8.37□□□□□ -1.07
NIPBL-208ENST00000514335 TLDC2A0PJX2 215 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 EIF4BP23588 611 aaKnown RBP8.36□□□□□ -1.07
NIPBL-208ENST00000514335 PDE4AP27815 886 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 HOXC13P31276 330 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 CLCN2P51788 898 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 MKRN4PQ13434 485 aaPredicted RBP8.36□□□□□ -1.07
NIPBL-208ENST00000514335 SYCP2LQ5T4T6 812 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 C9orf131Q5VYM1 1079 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 SDE2Q6IQ49 451 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 TMEM151BQ8IW70 566 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 SOS1Q07889 1333 aaPredicted RBP8.36□□□□□ -1.07
NIPBL-208ENST00000514335 NALCNQ8IZF0 1738 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 H0Y3Z8 333 aa8.36□□□□□ -1.07
NIPBL-208ENST00000514335 SEMA3EO15041 775 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms