RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MAP3K2Q9Y2U5 619 aa21.26■□□□□ 0.99
VIM-208ENST00000497849 PTCH2Q9Y6C5 1203 aa21.26■□□□□ 0.99
VIM-208ENST00000497849 CLRN2A0PK11 232 aa21.25■□□□□ 0.99
VIM-208ENST00000497849 SUPT20HL1Q3ZLR7 823 aa21.25■□□□□ 0.99
VIM-208ENST00000497849 CD209Q9NNX6 404 aa21.25■□□□□ 0.99
VIM-208ENST00000497849 DDX58O95786 925 aaKnown RBP21.24■□□□□ 0.99
VIM-208ENST00000497849 IREB2P48200 963 aaKnown RBP21.24■□□□□ 0.99
VIM-208ENST00000497849 SLC9C1Q4G0N8 1177 aa21.24■□□□□ 0.99
VIM-208ENST00000497849 ANKRD13AQ8IZ07 590 aa21.24■□□□□ 0.99
VIM-208ENST00000497849 MS4A4AQ96JQ5 239 aa21.24■□□□□ 0.99
VIM-208ENST00000497849 PRMT6Q96LA8 375 aaPredicted RBP21.24■□□□□ 0.99
VIM-208ENST00000497849 IRS2Q9Y4H2 1338 aa21.24■□□□□ 0.99
VIM-208ENST00000497849 SPDYE2BA6NHP3 402 aa21.23■□□□□ 0.99
VIM-208ENST00000497849 SPDYE6P0CI01 402 aa21.23■□□□□ 0.99
VIM-208ENST00000497849 IGHMBP2P38935 993 aaKnown RBP21.23■□□□□ 0.99
VIM-208ENST00000497849 ANKRD2Q9GZV1 360 aa21.23■□□□□ 0.99
VIM-208ENST00000497849 ZEB1P37275 1124 aaPredicted RBP21.22■□□□□ 0.99
VIM-208ENST00000497849 RALBP1Q15311 655 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 SLC4A8Q2Y0W8 1093 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 CFAP100Q494V2 611 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 NBPF11Q86T75 865 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 C8orf58Q8NAV2 365 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 VEZTQ9HBM0 779 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 ZSWIM8A7E2V4 1837 aa21.22■□□□□ 0.99
VIM-208ENST00000497849 PI4KAP2A4QPH2 592 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 F8W031 263 aaPredicted RBP21.21■□□□□ 0.99
VIM-208ENST00000497849 SNAP23O00161 211 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 CWF19L2Q2TBE0 894 aaKnown RBP21.21■□□□□ 0.99
VIM-208ENST00000497849 KSR2Q6VAB6 950 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 PI4KAP1Q8N8J0 262 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 OPTNQ96CV9 577 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 ELP3Q9H9T3 547 aa21.21■□□□□ 0.99
VIM-208ENST00000497849 H7C1W4 665 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 MYO1BO43795 1136 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 MYCP01106 439 aaPredicted RBP21.2■□□□□ 0.98
VIM-208ENST00000497849 ITGA6P23229 1130 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 RASA3Q14644 834 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 CHRDL2Q6WN34 429 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 BRI3BPQ8WY22 251 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 A0A1B0GUL6 1792 aa21.2■□□□□ 0.98
VIM-208ENST00000497849 NEURL1BA8MQ27 555 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 CHRNDQ07001 517 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 UBE3BQ7Z3V4 1068 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 CNKSR2Q8WXI2 1034 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 IFT57Q9NWB7 429 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 ADAMTS8Q9UP79 889 aa21.19■□□□□ 0.98
VIM-208ENST00000497849 KCNJ4P48050 445 aa21.18■□□□□ 0.98
VIM-208ENST00000497849 ARHGEF6Q15052 776 aa21.18■□□□□ 0.98
VIM-208ENST00000497849 TAF1CQ15572 869 aaPredicted RBP21.18■□□□□ 0.98
VIM-208ENST00000497849 SH3TC2Q8TF17 1288 aa21.18■□□□□ 0.98
VIM-208ENST00000497849 MPHOSPH8Q99549 860 aa21.18■□□□□ 0.98
VIM-208ENST00000497849 ZFYVE28Q9HCC9 887 aa21.18■□□□□ 0.98
VIM-208ENST00000497849 GNAI1P63096 354 aa21.17■□□□□ 0.98
VIM-208ENST00000497849 CCDC30Q5VVM6 783 aa21.17■□□□□ 0.98
VIM-208ENST00000497849 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.17■□□□□ 0.98
VIM-208ENST00000497849 C15orf52Q6ZUT6 534 aaKnown RBP21.17■□□□□ 0.98
VIM-208ENST00000497849 CDAN1Q8IWY9 1227 aa21.17■□□□□ 0.98
VIM-208ENST00000497849 FAM43AQ8N2R8 423 aa21.17■□□□□ 0.98
VIM-208ENST00000497849 PLA2G12BQ9BX93 195 aa21.17■□□□□ 0.98
VIM-208ENST00000497849 RBM27Q9P2N5 1060 aaKnown RBP21.17■□□□□ 0.98
VIM-208ENST00000497849 CCL15-CCL14A0A0B4J2E2 113 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 TAF5LO75529 589 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 CSF1RP07333 972 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 IL1R1P14778 569 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 FKBP1AP62942 108 aaKnown RBP21.16■□□□□ 0.98
VIM-208ENST00000497849 NEXNQ0ZGT2 675 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 CCL15Q16663 113 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 ARHGAP39Q9C0H5 1083 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 JAG2Q9Y219 1238 aa21.16■□□□□ 0.98
VIM-208ENST00000497849 CASP7P55210 303 aa21.15■□□□□ 0.98
VIM-208ENST00000497849 WDR43Q15061 677 aaKnown RBP eCLIP21.15■□□□□ 0.98
VIM-208ENST00000497849 TSPYL6Q8N831 410 aa21.15■□□□□ 0.98
VIM-208ENST00000497849 TEPSINQ96N21 525 aa21.15■□□□□ 0.98
VIM-208ENST00000497849 GTF2A2P52657 109 aa21.14■□□□□ 0.97
VIM-208ENST00000497849 HELBQ8NG08 1087 aaPredicted RBP21.14■□□□□ 0.97
VIM-208ENST00000497849 SHISA4Q96DD7 197 aa21.14■□□□□ 0.97
VIM-208ENST00000497849 COL6A3P12111 3177 aa21.13■□□□□ 0.97
VIM-208ENST00000497849 MYBBP1AQ9BQG0 1328 aaKnown RBP21.13■□□□□ 0.97
VIM-208ENST00000497849 DLL1O00548 723 aa21.13■□□□□ 0.97
VIM-208ENST00000497849 RBM5P52756 815 aaKnown RBP eCLIP21.13■□□□□ 0.97
VIM-208ENST00000497849 VGLL4Q14135 290 aa21.13■□□□□ 0.97
VIM-208ENST00000497849 SPDYE2Q495Y8 402 aa21.13■□□□□ 0.97
VIM-208ENST00000497849 ZNF70Q9UC06 446 aaPredicted RBP21.13■□□□□ 0.97
VIM-208ENST00000497849 LACTBP83111 547 aaPredicted RBP21.12■□□□□ 0.97
VIM-208ENST00000497849 GCKRQ14397 625 aa21.12■□□□□ 0.97
VIM-208ENST00000497849 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.12■□□□□ 0.97
VIM-208ENST00000497849 ARAP2Q8WZ64 1704 aa21.12■□□□□ 0.97
VIM-208ENST00000497849 TLR2O60603 784 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 MAP3K9P80192 1104 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 TNFAIP1Q13829 316 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 MTFR1Q15390 333 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 G2E3Q7L622 706 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 ZNF804AQ7Z570 1209 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 PRO3102Q9H379 93 aa21.11■□□□□ 0.97
VIM-208ENST00000497849 TDRD3Q9H7E2 651 aaKnown RBP21.11■□□□□ 0.97
VIM-208ENST00000497849 A0A0C4DFX4 3053 aa21.1■□□□□ 0.97
VIM-208ENST00000497849 DPF3Q92784 378 aa21.1■□□□□ 0.97
VIM-208ENST00000497849 CHMP4AQ9BY43 222 aa21.1■□□□□ 0.97
VIM-208ENST00000497849 ANKRD18BA2A2Z9 1011 aa21.09■□□□□ 0.97
VIM-208ENST00000497849 APAF1O14727 1248 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms