RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 NLRP13Q86W25 1043 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 RRP7BPQ9NSQ0 103 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 DCTN4Q9UJW0 460 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 IQGAP1P46940 1657 aa9.9□□□□□ -0.83
VIM-207ENST00000495528 RNF17Q9BXT8 1623 aaKnown RBP9.89□□□□□ -0.83
VIM-207ENST00000495528 STRCP1A6NGW2 1772 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 WIPF1O43516 503 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 RPLP1P05386 114 aaKnown RBP9.89□□□□□ -0.83
VIM-207ENST00000495528 USP5P45974 858 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 MARSP56192 900 aaKnown RBP9.89□□□□□ -0.83
VIM-207ENST00000495528 GOLGA6L1Q8N7Z2 621 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 UBE2OQ9C0C9 1292 aaKnown RBP9.89□□□□□ -0.83
VIM-207ENST00000495528 ELP3Q9H9T3 547 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 C11orf16Q9NQ32 467 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 TMEM63CQ9P1W3 806 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 RGS17Q9UGC6 210 aaPredicted RBP9.89□□□□□ -0.83
VIM-207ENST00000495528 MYOM3Q5VTT5 1437 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 MROH1Q8NDA8 1641 aa9.89□□□□□ -0.83
VIM-207ENST00000495528 SCAF11Q99590 1463 aaKnown RBP9.88□□□□□ -0.83
VIM-207ENST00000495528 MMP20O60882 483 aa9.88□□□□□ -0.83
VIM-207ENST00000495528 C1orf229Q6ZS94 237 aaPredicted RBP9.88□□□□□ -0.83
VIM-207ENST00000495528 FCHSD1Q86WN1 690 aa9.88□□□□□ -0.83
VIM-207ENST00000495528 GJD3Q8N144 294 aa9.88□□□□□ -0.83
VIM-207ENST00000495528 GDF2Q9UK05 429 aaPredicted RBP9.88□□□□□ -0.83
VIM-207ENST00000495528 EID1Q9Y6B2 187 aa9.88□□□□□ -0.83
VIM-207ENST00000495528 ARHGAP31Q2M1Z3 1444 aa9.88□□□□□ -0.83
VIM-207ENST00000495528 ARHGAP23Q9P227 1491 aa9.87□□□□□ -0.83
VIM-207ENST00000495528 SIN3BO75182 1162 aa9.87□□□□□ -0.83
VIM-207ENST00000495528 CELA2BP08218 269 aaPredicted RBP9.87□□□□□ -0.83
VIM-207ENST00000495528 TTC39BQ5VTQ0 682 aaPredicted RBP9.87□□□□□ -0.83
VIM-207ENST00000495528 AVENQ9NQS1 362 aaPredicted RBP9.87□□□□□ -0.83
VIM-207ENST00000495528 ABCC5O15440 1437 aa9.87□□□□□ -0.83
VIM-207ENST00000495528 KIF15Q9NS87 1388 aa9.87□□□□□ -0.83
VIM-207ENST00000495528 DUOX2Q9NRD8 1548 aa9.87□□□□□ -0.83
VIM-207ENST00000495528 EIF2AK4Q9P2K8 1649 aaKnown RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 MLLT1Q03111 559 aaPredicted RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 IDI1Q13907 227 aa9.86□□□□□ -0.83
VIM-207ENST00000495528 PDE12Q6L8Q7 609 aaKnown RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 DHX32Q7L7V1 743 aaKnown RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 SVOPQ8N4V2 548 aa9.86□□□□□ -0.83
VIM-207ENST00000495528 GALNT6Q8NCL4 622 aa9.86□□□□□ -0.83
VIM-207ENST00000495528 EFCC1Q9HA90 598 aa9.86□□□□□ -0.83
VIM-207ENST00000495528 ABI2Q9NYB9 513 aaPredicted RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 ZC3H13Q5T200 1668 aaKnown RBP9.86□□□□□ -0.83
VIM-207ENST00000495528 TMEM2Q9UHN6 1383 aa9.86□□□□□ -0.83
VIM-207ENST00000495528 UBR1Q8IWV7 1749 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 BCRP11274 1271 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 EHHADHQ08426 723 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 ZNF385CQ66K41 422 aaPredicted RBP9.85□□□□□ -0.83
VIM-207ENST00000495528 SLCO4C1Q6ZQN7 724 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 TMC7Q7Z402 723 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 EDARADDQ8WWZ3 215 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 DNAJB12Q9NXW2 375 aaKnown RBP9.85□□□□□ -0.83
VIM-207ENST00000495528 CNTN3Q9P232 1028 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 FOXD3Q9UJU5 478 aaPredicted RBP9.85□□□□□ -0.83
VIM-207ENST00000495528 CFAP65Q6ZU64 1925 aaKnown RBP9.85□□□□□ -0.83
VIM-207ENST00000495528 SLIT1O75093 1534 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 MAP3K1Q13233 1512 aa9.85□□□□□ -0.83
VIM-207ENST00000495528 MAP3K6O95382 1288 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 PSAPP07602 524 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 KCNA6P17658 529 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 ADH7P40394 386 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 MAP3K10Q02779 954 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 PDE3BQ13370 1112 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 HFE2Q6ZVN8 426 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 NSUN5Q96P11 429 aaKnown RBP9.84□□□□□ -0.83
VIM-207ENST00000495528 SLC26A8Q96RN1 970 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 RBCK1Q9BYM8 510 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 NIF3L1Q9GZT8 377 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 TLR7Q9NYK1 1049 aaKnown RBP9.84□□□□□ -0.83
VIM-207ENST00000495528 CEP152O94986 1710 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 SYNMO15061 1565 aa9.84□□□□□ -0.83
VIM-207ENST00000495528 FAM135BQ49AJ0 1406 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 ERBINQ96RT1 1412 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 SHISA8B8ZZ34 492 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 OIP5O43482 229 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 TNFRSF21O75509 655 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 CYP2E1P05181 493 aaPredicted RBP9.83□□□□□ -0.84
VIM-207ENST00000495528 EPXP11678 715 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 CCDC27Q2M243 656 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 TMCO4Q5TGY1 634 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 XKR5Q6UX68 686 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 C1orf127Q8N9H9 656 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 ZSCAN1Q8NBB4 408 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 CITED4Q96RK1 184 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 FAM129BQ96TA1 746 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 TMEM94Q12767 1356 aa9.83□□□□□ -0.84
VIM-207ENST00000495528 PRDM15P57071 1507 aaPredicted RBP9.82□□□□□ -0.84
VIM-207ENST00000495528 ELOA3CA0A087WX78 387 aaPredicted RBP9.82□□□□□ -0.84
VIM-207ENST00000495528 ELOA3DA6NLF2 546 aaPredicted RBP9.82□□□□□ -0.84
VIM-207ENST00000495528 ZBTB42B2RXF5 422 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 GPR182O15218 404 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 PHACTR2O75167 634 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 ALAS2P22557 587 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 AMPD1P23109 780 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 PLAURQ03405 335 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 ELOA3BQ3SY89 546 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 ELOA3Q8NG57 546 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 TNFRSF25Q93038 417 aa9.82□□□□□ -0.84
VIM-207ENST00000495528 KANSL3Q9P2N6 904 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms