RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 PPP2R2DQ66LE6 453 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 PRR5LQ6MZQ0 368 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 G2E3Q7L622 706 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 SAPCD2Q86UD0 394 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 CCDC24Q8N4L8 307 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 KCNK17Q96T54 332 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 METTL22Q9BUU2 404 aaPredicted RBP8.6□□□□□ -1.03
VPS52-219ENST00000493379 NIP7Q9Y221 180 aaKnown RBP eCLIP8.6□□□□□ -1.03
VPS52-219ENST00000493379 RIC1Q4ADV7 1423 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 SCN7AQ01118 1682 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 PI4KAP2A4QPH2 592 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 SPDYE5A6NIY4 337 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 H0YGN5 161 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 SMAPO00193 183 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 SPTLC1O15269 473 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 NTSR2O95665 410 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 DDX58O95786 925 aaKnown RBP8.59□□□□□ -1.03
VPS52-219ENST00000493379 AIMP1Q12904 312 aaKnown RBP8.59□□□□□ -1.03
VPS52-219ENST00000493379 TUSC1Q2TAM9 212 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 CRY2Q49AN0 593 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 NLRP10Q86W26 655 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 SYNE4Q8N205 404 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 MRPL50Q8N5N7 158 aaKnown RBP8.59□□□□□ -1.03
VPS52-219ENST00000493379 TTLL6Q8N841 843 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 PI4KAP1Q8N8J0 262 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 CCDC191Q8NCU4 936 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 BANK1Q8NDB2 785 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 SSH1Q8WYL5 1049 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 NYXQ9GZU5 481 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 ZBTB3Q9H5J0 574 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 ZNF330Q9Y3S2 320 aaPredicted RBP8.59□□□□□ -1.03
VPS52-219ENST00000493379 CENPFP49454 3210 aa8.59□□□□□ -1.03
VPS52-219ENST00000493379 AFDNP55196 1824 aaKnown RBP8.59□□□□□ -1.03
VPS52-219ENST00000493379 LAMA3Q16787 3333 aa8.59□□□□□ -1.04
VPS52-219ENST00000493379 BCORQ6W2J9 1755 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 SOX1O00570 391 aaPredicted RBP8.58□□□□□ -1.04
VPS52-219ENST00000493379 C21orf2O43822 256 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 IGKV5-2P06315 115 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 HOXA10P31260 410 aaPredicted RBP8.58□□□□□ -1.04
VPS52-219ENST00000493379 PDE6BP35913 854 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 RARSP54136 660 aaKnown RBP8.58□□□□□ -1.04
VPS52-219ENST00000493379 RSBN1LQ6PCB5 846 aaPredicted RBP8.58□□□□□ -1.04
VPS52-219ENST00000493379 PPP1R42Q7Z4L9 355 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 NUTM1Q86Y26 1132 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 ARHGAP45Q92619 1136 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 SNX27Q96L92 541 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 AKAP11Q9UKA4 1901 aa8.58□□□□□ -1.04
VPS52-219ENST00000493379 PTPRCP08575 1304 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 CACNA1FO60840 1977 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 HTTP42858 3142 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 H7C1W4 665 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 SRGNP10124 158 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 TMEM259Q4ZIN3 620 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 BEND3Q5T5X7 828 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 BICDL1Q6ZP65 573 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 NBPF5PQ86XG9 351 aaPredicted RBP8.57□□□□□ -1.04
VPS52-219ENST00000493379 CNBD1Q8NA66 436 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 ZBTB38Q8NAP3 1195 aaPredicted RBP8.57□□□□□ -1.04
VPS52-219ENST00000493379 LINS1Q8NG48 757 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 LRCH3Q96II8 777 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 ARID3AQ99856 593 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 ZBED2Q9BTP6 218 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 UTP14AQ9BVJ6 771 aaKnown RBP8.57□□□□□ -1.04
VPS52-219ENST00000493379 RNF186Q9NXI6 227 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 MAP3K2Q9Y2U5 619 aa8.57□□□□□ -1.04
VPS52-219ENST00000493379 CACNA1SQ13698 1873 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 MOXD2PA6NHM9 499 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 CELF2O95319 508 aaKnown RBP8.56□□□□□ -1.04
VPS52-219ENST00000493379 PCCAP05165 728 aaPredicted RBP8.56□□□□□ -1.04
VPS52-219ENST00000493379 GJA5P36382 358 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 CASP7P55210 303 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 SF3B3Q15393 1217 aaKnown RBP8.56□□□□□ -1.04
VPS52-219ENST00000493379 STYK1Q6J9G0 422 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 C7orf43Q8WVR3 580 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 DNAAF4Q8WXU2 420 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 FAM122AQ96E09 287 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 POM121Q96HA1 1249 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 SNRKQ9NRH2 765 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 KIAA1468Q9P260 1216 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 NUP98P52948 1817 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 TTC28Q96AY4 2481 aa8.56□□□□□ -1.04
VPS52-219ENST00000493379 SH3TC1Q8TE82 1336 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 CDHR2Q9BYE9 1310 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 NEURL1BA8MQ27 555 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 TCERG1O14776 1098 aaKnown RBP8.55□□□□□ -1.04
VPS52-219ENST00000493379 ALDH1L1O75891 902 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 ST5P78524 1137 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 PNMA8AQ86V59 439 aaPredicted RBP8.55□□□□□ -1.04
VPS52-219ENST00000493379 C2CD5Q86YS7 1000 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 MASTLQ96GX5 879 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 PLA2G12BQ9BX93 195 aa8.55□□□□□ -1.04
VPS52-219ENST00000493379 UTYO14607 1347 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 ATP5J2-PTCD1G3V325 749 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 H0YIN7 160 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 RAD21O60216 631 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 HSP90B1P14625 803 aaKnown RBP8.54□□□□□ -1.04
VPS52-219ENST00000493379 NPR1P16066 1061 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 NDUFV2P19404 249 aa8.54□□□□□ -1.04
VPS52-219ENST00000493379 EN2P19622 333 aaPredicted RBP8.54□□□□□ -1.04
VPS52-219ENST00000493379 GPTP24298 496 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms