RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 BCAMP50895 628 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 CCDC93Q567U6 631 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 ZNF512BQ96KM6 892 aaPredicted RBP17.11■□□□□ 0.33
CUX1-209ENST00000487284 FAM84BQ96KN1 310 aaPredicted RBP17.11■□□□□ 0.33
CUX1-209ENST00000487284 FAM227BQ96M60 508 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 PAG1Q9NWQ8 432 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 BCS1LQ9Y276 419 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 HSPA4P34932 840 aa17.1■□□□□ 0.33
CUX1-209ENST00000487284 KIAA1211Q6ZU35 1233 aa17.1■□□□□ 0.33
CUX1-209ENST00000487284 NDUFB9Q9Y6M9 179 aa17.1■□□□□ 0.33
CUX1-209ENST00000487284 FER1L6Q2WGJ9 1857 aa17.09■□□□□ 0.33
CUX1-209ENST00000487284 A0A0D9SFI3 127 aa17.09■□□□□ 0.33
CUX1-209ENST00000487284 SCARF1Q14162 830 aa17.09■□□□□ 0.33
CUX1-209ENST00000487284 CAVIN4Q5BKX8 364 aa17.09■□□□□ 0.33
CUX1-209ENST00000487284 C15orf52Q6ZUT6 534 aaKnown RBP17.09■□□□□ 0.33
CUX1-209ENST00000487284 FBXO33Q7Z6M2 555 aa17.09■□□□□ 0.33
CUX1-209ENST00000487284 CCDC171Q6TFL3 1326 aa17.08■□□□□ 0.33
CUX1-209ENST00000487284 GOLIM4O00461 696 aa17.08■□□□□ 0.32
CUX1-209ENST00000487284 ARID4AP29374 1257 aaPredicted RBP17.08■□□□□ 0.32
CUX1-209ENST00000487284 RTFDC1Q9BY42 306 aaPredicted RBP17.08■□□□□ 0.32
CUX1-209ENST00000487284 PALD1Q9ULE6 856 aa17.08■□□□□ 0.32
CUX1-209ENST00000487284 IQSEC3Q9UPP2 1182 aaPredicted RBP17.08■□□□□ 0.32
CUX1-209ENST00000487284 RIMBP2O15034 1052 aa17.07■□□□□ 0.32
CUX1-209ENST00000487284 CD2BP2O95400 341 aaKnown RBP17.07■□□□□ 0.32
CUX1-209ENST00000487284 HIBADHP31937 336 aaKnown RBP17.07■□□□□ 0.32
CUX1-209ENST00000487284 MCAMP43121 646 aa17.07■□□□□ 0.32
CUX1-209ENST00000487284 SOGA3Q5TF21 947 aa17.07■□□□□ 0.32
CUX1-209ENST00000487284 PI16Q6UXB8 463 aa17.07■□□□□ 0.32
CUX1-209ENST00000487284 VPS37DQ86XT2 251 aa17.07■□□□□ 0.32
CUX1-209ENST00000487284 UQCRFS1P1P0C7P4 283 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 RTKN2Q8IZC4 609 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 COL1A1P02452 1464 aaPredicted RBP17.06■□□□□ 0.32
CUX1-209ENST00000487284 UTRNP46939 3433 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 PTH1RQ03431 593 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 RASGRF1Q13972 1273 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 WASHC4Q2M389 1173 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 GRIPAP1Q4V328 841 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 ZNF804AQ7Z570 1209 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 IL27Q8NEV9 243 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 EYA3Q99504 573 aa17.06■□□□□ 0.32
CUX1-209ENST00000487284 ZC3H12CQ9C0D7 883 aaKnown RBP17.06■□□□□ 0.32
CUX1-209ENST00000487284 LAMA4Q16363 1823 aa17.05■□□□□ 0.32
CUX1-209ENST00000487284 CHD4Q14839 1912 aa17.05■□□□□ 0.32
CUX1-209ENST00000487284 K7ELQ4 463 aaPredicted RBP17.05■□□□□ 0.32
CUX1-209ENST00000487284 KCNB2Q92953 911 aa17.05■□□□□ 0.32
CUX1-209ENST00000487284 PSMD1Q99460 953 aa17.05■□□□□ 0.32
CUX1-209ENST00000487284 GNL3LQ9NVN8 582 aaKnown RBP17.05■□□□□ 0.32
CUX1-209ENST00000487284 HMG20BQ9P0W2 317 aa17.05■□□□□ 0.32
CUX1-209ENST00000487284 ZAP70P43403 619 aa17.04■□□□□ 0.32
CUX1-209ENST00000487284 FKBP4Q02790 459 aaKnown RBP eCLIP17.04■□□□□ 0.32
CUX1-209ENST00000487284 SUPT20HQ8NEM7 779 aa17.04■□□□□ 0.32
CUX1-209ENST00000487284 MAP4K1Q92918 833 aa17.04■□□□□ 0.32
CUX1-209ENST00000487284 ANTXR1Q9H6X2 564 aa17.04■□□□□ 0.32
CUX1-209ENST00000487284 NFKBIEO00221 500 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 ST18O60284 1047 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 ZMYM1Q5SVZ6 1142 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 ZNF589Q86UQ0 364 aaPredicted RBP17.03■□□□□ 0.32
CUX1-209ENST00000487284 SPATA5Q8NB90 893 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 CD209Q9NNX6 404 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 SNX14Q9Y5W7 946 aa17.03■□□□□ 0.32
CUX1-209ENST00000487284 FRAT2O75474 233 aaPredicted RBP17.02■□□□□ 0.32
CUX1-209ENST00000487284 KIAA2012Q0VF49 1180 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 NECTIN1Q15223 517 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 AOC3Q16853 763 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 DOK7Q18PE1 504 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 LRRFIP1Q32MZ4 808 aaKnown RBP17.02■□□□□ 0.32
CUX1-209ENST00000487284 MCMDC2Q4G0Z9 681 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 TDRD7Q8NHU6 1098 aaKnown RBP17.02■□□□□ 0.32
CUX1-209ENST00000487284 ZNF277Q9NRM2 450 aaPredicted RBP17.02■□□□□ 0.32
CUX1-209ENST00000487284 HELLSQ9NRZ9 838 aa17.02■□□□□ 0.32
CUX1-209ENST00000487284 RNF113AO15541 343 aaKnown RBP17.02■□□□□ 0.31
CUX1-209ENST00000487284 PPIP5K2O43314 1243 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 CHGBP05060 677 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 CYP2E1P05181 493 aaPredicted RBP17.02■□□□□ 0.31
CUX1-209ENST00000487284 ZFYP08048 801 aaPredicted RBP17.02■□□□□ 0.31
CUX1-209ENST00000487284 IL1R1P14778 569 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 COA1Q9GZY4 146 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 TAOK3Q9H2K8 898 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 DBNDD1Q9H9R9 158 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 DENND2AQ9ULE3 1009 aa17.02■□□□□ 0.31
CUX1-209ENST00000487284 RBM8AQ9Y5S9 174 aaKnown RBP17.02■□□□□ 0.31
CUX1-209ENST00000487284 COL4A5P29400 1685 aa17.01■□□□□ 0.31
CUX1-209ENST00000487284 SCN9AQ15858 1988 aa17.01■□□□□ 0.31
CUX1-209ENST00000487284 SEMA3EO15041 775 aa17.01■□□□□ 0.31
CUX1-209ENST00000487284 RASEFQ8IZ41 740 aa17.01■□□□□ 0.31
CUX1-209ENST00000487284 JAG2Q9Y219 1238 aa17.01■□□□□ 0.31
CUX1-209ENST00000487284 CCDC88AQ3V6T2 1871 aa17■□□□□ 0.31
CUX1-209ENST00000487284 NEK4P51957 841 aa17■□□□□ 0.31
CUX1-209ENST00000487284 RASSF7Q02833 373 aa17■□□□□ 0.31
CUX1-209ENST00000487284 CHAF1AQ13111 956 aaPredicted RBP17■□□□□ 0.31
CUX1-209ENST00000487284 TTF1Q15361 905 aaPredicted RBP17■□□□□ 0.31
CUX1-209ENST00000487284 SEC62Q99442 399 aaKnown RBP17■□□□□ 0.31
CUX1-209ENST00000487284 G3V3G9 751 aa16.99■□□□□ 0.31
CUX1-209ENST00000487284 ZBTB22O15209 634 aa16.99■□□□□ 0.31
CUX1-209ENST00000487284 YBX3P16989 372 aaKnown RBP eCLIP16.99■□□□□ 0.318e-7■■□□□ 12.2
CUX1-209ENST00000487284 MCM2P49736 904 aa16.99■□□□□ 0.31
CUX1-209ENST00000487284 DCAF8Q5TAQ9 597 aa16.99■□□□□ 0.31
CUX1-209ENST00000487284 SLKQ9H2G2 1235 aaPredicted RBP16.99■□□□□ 0.31
CUX1-209ENST00000487284 PIH1D3Q9NQM4 214 aaKnown RBP16.99■□□□□ 0.31
CUX1-209ENST00000487284 MAST3O60307 1309 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms