RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SMG6Q86US8 1419 aaKnown RBP7.53□□□□□ -1.2
PTPN4-210ENST00000485247 RASSF10A6NK89 507 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 H3BM21 787 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 POLRMTO00411 1230 aaKnown RBP7.53□□□□□ -1.2
PTPN4-210ENST00000485247 MAN1A2O60476 641 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 HSP90AB2PQ58FF8 381 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 LDHDQ86WU2 507 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 TTLL6Q8N841 843 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 MCOLN1Q9GZU1 580 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 ABT1Q9ULW3 272 aaKnown RBP7.53□□□□□ -1.2
PTPN4-210ENST00000485247 CCDC88AQ3V6T2 1871 aa7.53□□□□□ -1.2
PTPN4-210ENST00000485247 CNTNAP4Q9C0A0 1308 aa7.52□□□□□ -1.2
PTPN4-210ENST00000485247 RTL1A6NKG5 1358 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 KDRP35968 1356 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 WIPF1O43516 503 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 RELBQ01201 579 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 GRM1Q13255 1194 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 EAPPQ56P03 285 aaPredicted RBP7.52□□□□□ -1.21
PTPN4-210ENST00000485247 NPAS3Q8IXF0 933 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 CYLDQ9NQC7 956 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 SPG7Q9UQ90 795 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 ERBB4Q15303 1308 aa7.52□□□□□ -1.21
PTPN4-210ENST00000485247 USP42Q9H9J4 1324 aaKnown RBP7.52□□□□□ -1.21
PTPN4-210ENST00000485247 ROCK2O75116 1388 aaKnown RBP7.51□□□□□ -1.21
PTPN4-210ENST00000485247 IQCA1LA6NCM1 817 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 TTLL8A6PVC2 850 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 APBB1O00213 710 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 ADH1AP07327 375 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 TM4SF1P30408 202 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 IRF5Q13568 498 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 C2CD5Q86YS7 1000 aa7.51□□□□□ -1.21
PTPN4-210ENST00000485247 TAF1DQ9H5J8 278 aaPredicted RBP7.51□□□□□ -1.21
PTPN4-210ENST00000485247 PDE4DIPQ5VU43 2346 aa7.5□□□□□ -1.21
PTPN4-210ENST00000485247 CTSOP43234 321 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-210ENST00000485247 DGKZQ13574 1117 aa7.5□□□□□ -1.21
PTPN4-210ENST00000485247 MAP1SQ66K74 1059 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-210ENST00000485247 INSM2Q96T92 566 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-210ENST00000485247 ZNF395Q9H8N7 513 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-210ENST00000485247 INSRP06213 1382 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 TNRC18O15417 2968 aaPredicted RBP7.49□□□□□ -1.21
PTPN4-210ENST00000485247 FIGNL2A6NMB9 653 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 H0YIN7 160 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 C21orf2O43822 256 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 PHKG2P15735 406 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 CRKLP46109 303 aaKnown RBP7.49□□□□□ -1.21
PTPN4-210ENST00000485247 SOX10P56693 466 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 MCM6Q14566 821 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 USPL1Q5W0Q7 1092 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 CYP4F22Q6NT55 531 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 IFNL2Q8IZJ0 200 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 CNTROBQ8N137 903 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 CAPNS2Q96L46 248 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 GPR101Q96P66 508 aaPredicted RBP7.49□□□□□ -1.21
PTPN4-210ENST00000485247 GGNBP2Q9H3C7 697 aa7.49□□□□□ -1.21
PTPN4-210ENST00000485247 MYH14Q7Z406 1995 aaKnown RBP7.48□□□□□ -1.21
PTPN4-210ENST00000485247 PTCD1O75127 700 aaKnown RBP7.48□□□□□ -1.21
PTPN4-210ENST00000485247 COL5A3P25940 1745 aaPredicted RBP7.48□□□□□ -1.21
PTPN4-210ENST00000485247 GMPRP36959 345 aa7.48□□□□□ -1.21
PTPN4-210ENST00000485247 SCTRP47872 440 aa7.48□□□□□ -1.21
PTPN4-210ENST00000485247 NFIXQ14938 502 aa7.48□□□□□ -1.21
PTPN4-210ENST00000485247 FOXD4L5Q5VV16 416 aaPredicted RBP7.48□□□□□ -1.21
PTPN4-210ENST00000485247 L3MBTL2Q969R5 705 aa7.48□□□□□ -1.21
PTPN4-210ENST00000485247 ZNF622Q969S3 477 aaKnown RBP eCLIP7.48□□□□□ -1.21
PTPN4-210ENST00000485247 TAOK3Q9H2K8 898 aa7.48□□□□□ -1.21
PTPN4-210ENST00000485247 FLT4P35916 1363 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 PPFIA3O75145 1194 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 SERPINB2P05120 415 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 EPHX2P34913 555 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 ECE1P42892 770 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 PTGIRP43119 386 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 ERVK-9P63128 1117 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.47□□□□□ -1.21
PTPN4-210ENST00000485247 RNF217Q8TC41 542 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 IRF7Q92985 503 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 GDPD2Q9HCC8 539 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 HACL1Q9UJ83 578 aa7.47□□□□□ -1.21
PTPN4-210ENST00000485247 CARMIL3Q8ND23 1372 aa7.46□□□□□ -1.21
PTPN4-210ENST00000485247 FYB1O15117 783 aa7.46□□□□□ -1.22
PTPN4-210ENST00000485247 AOC2O75106 756 aa7.46□□□□□ -1.22
PTPN4-210ENST00000485247 VSIG8P0DPA2 414 aa7.46□□□□□ -1.22
PTPN4-210ENST00000485247 MCCD1P59942 119 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 PTSQ03393 145 aa7.46□□□□□ -1.22
PTPN4-210ENST00000485247 FMR1Q06787 632 aaKnown RBP eCLIP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 POLMQ9NP87 494 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 DDX21Q9NR30 783 aaKnown RBP eCLIP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 ZNF330Q9Y3S2 320 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 DICER1Q9UPY3 1922 aaKnown RBP7.46□□□□□ -1.22
PTPN4-210ENST00000485247 CASP8AP2Q9UKL3 1982 aa7.46□□□□□ -1.22
PTPN4-210ENST00000485247 ZNF831Q5JPB2 1677 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 ERVV-2B6SEH9 535 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 PPM1GO15355 546 aaPredicted RBP7.45□□□□□ -1.22
PTPN4-210ENST00000485247 CABP4P57796 275 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 VAC14Q08AM6 782 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 CC2D2BQ6DHV5 1058 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 INTS5Q6P9B9 1019 aaKnown RBP7.45□□□□□ -1.22
PTPN4-210ENST00000485247 PNMA8AQ86V59 439 aaPredicted RBP7.45□□□□□ -1.22
PTPN4-210ENST00000485247 PCDHB11Q9Y5F2 797 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 DLEC1Q9Y238 1755 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 RNF123Q5XPI4 1314 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 LTBP3Q9NS15 1303 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms