RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 CABP1Q9NZU7 370 aa24.4■■□□□ 1.5
SDF4-206ENST00000478938 SERPINC1P01008 464 aa24.39■■□□□ 1.5
SDF4-206ENST00000478938 TOP1P11387 765 aaKnown RBP24.39■■□□□ 1.5
SDF4-206ENST00000478938 GOLGA6L9A6NEM1 432 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 POTEB2H3BUK9 544 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 IRF6O14896 467 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 NDUFA8P51970 172 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 BAG1Q99933 345 aaPredicted RBP24.38■■□□□ 1.49
SDF4-206ENST00000478938 C21orf2O43822 256 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 VSTM4Q8IW00 320 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 MIEF2Q96C03 454 aa24.38■■□□□ 1.49
SDF4-206ENST00000478938 SYF2O95926 243 aaKnown RBP24.37■■□□□ 1.49
SDF4-206ENST00000478938 SSH3Q8TE77 659 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 MRPS27Q92552 414 aaKnown RBP24.37■■□□□ 1.49
SDF4-206ENST00000478938 FAM227BQ96M60 508 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 MRPL44Q9H9J2 332 aaKnown RBP24.37■■□□□ 1.49
SDF4-206ENST00000478938 ATP7AQ04656 1500 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 PRPF6O94906 941 aaKnown RBP24.37■■□□□ 1.49
SDF4-206ENST00000478938 GPTP24298 496 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 PPP1R42Q7Z4L9 355 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 FAXDC2Q96IV6 333 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 SLC24A3Q9HC58 644 aa24.37■■□□□ 1.49
SDF4-206ENST00000478938 NEDD4P46934 1319 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 ELF1P32519 619 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 GRIPAP1Q4V328 841 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 CD248Q9HCU0 757 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 EBAG9O00559 213 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 ECM2O94769 699 aaPredicted RBP24.36■■□□□ 1.49
SDF4-206ENST00000478938 INPP5BP32019 993 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 SETQ01105 290 aaPredicted RBP24.36■■□□□ 1.49
SDF4-206ENST00000478938 BIRC2Q13490 618 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 PDILTQ8N807 584 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 RIN2Q8WYP3 895 aaPredicted RBP24.36■■□□□ 1.49
SDF4-206ENST00000478938 EHD4Q9H223 541 aa24.36■■□□□ 1.49
SDF4-206ENST00000478938 NLRP12P59046 1061 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 MAP2K1Q02750 393 aaPredicted RBP24.35■■□□□ 1.49
SDF4-206ENST00000478938 MTX1Q13505 466 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 IGSF22Q8N9C0 903 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 ACBD3Q9H3P7 528 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 PCDHA7Q9UN72 937 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 ATP7BP35670 1465 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 MROH1Q8NDA8 1641 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 PAX7P23759 505 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 PRPF38AQ8NAV1 312 aaKnown RBP24.35■■□□□ 1.49
SDF4-206ENST00000478938 NECTIN2Q92692 538 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 MAP4K1Q92918 833 aa24.35■■□□□ 1.49
SDF4-206ENST00000478938 FRMPD1Q5SYB0 1578 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 MYO1FO00160 1098 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 UBTFL1P0CB47 393 aaPredicted RBP24.34■■□□□ 1.49
SDF4-206ENST00000478938 CEP112Q8N8E3 955 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 N4BP2L2Q92802 583 aaPredicted RBP24.34■■□□□ 1.49
SDF4-206ENST00000478938 USP44Q9H0E7 712 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 LZTFL1Q9NQ48 299 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 CRYBG1Q9Y4K1 1723 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 GLRX3O76003 335 aaKnown RBP24.34■■□□□ 1.49
SDF4-206ENST00000478938 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.34■■□□□ 1.491e-11■■□□□ 14.4
SDF4-206ENST00000478938 SMARCC1Q92922 1105 aaPredicted RBP24.34■■□□□ 1.49
SDF4-206ENST00000478938 KAT14Q9H8E8 782 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 CDC23Q9UJX2 597 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 CAPN7Q9Y6W3 813 aa24.34■■□□□ 1.49
SDF4-206ENST00000478938 CDHR2Q9BYE9 1310 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 A0A0U1RQJ8 604 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 NEBLO76041 1014 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 ADKP55263 362 aaKnown RBP24.33■■□□□ 1.49
SDF4-206ENST00000478938 FLIIQ13045 1269 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 ATRIPQ8WXE1 791 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 MCM8Q9UJA3 840 aa24.33■■□□□ 1.49
SDF4-206ENST00000478938 PPFIA3O75145 1194 aa24.33■■□□□ 1.48
SDF4-206ENST00000478938 NEDD9Q14511 834 aa24.33■■□□□ 1.48
SDF4-206ENST00000478938 MTF1Q14872 753 aa24.33■■□□□ 1.48
SDF4-206ENST00000478938 RRS1Q15050 365 aaKnown RBP24.33■■□□□ 1.48
SDF4-206ENST00000478938 NAIF1Q69YI7 327 aaPredicted RBP24.33■■□□□ 1.48
SDF4-206ENST00000478938 STAG1Q8WVM7 1258 aa24.33■■□□□ 1.48
SDF4-206ENST00000478938 CABS1Q96KC9 395 aa24.33■■□□□ 1.48
SDF4-206ENST00000478938 CBFA2T2O43439 604 aa24.32■■□□□ 1.48
SDF4-206ENST00000478938 SLC3A2P08195 630 aaKnown RBP24.32■■□□□ 1.48
SDF4-206ENST00000478938 HSP90B1P14625 803 aaKnown RBP24.32■■□□□ 1.48
SDF4-206ENST00000478938 FAM43BQ6ZT52 329 aaPredicted RBP24.32■■□□□ 1.48
SDF4-206ENST00000478938 POTEDQ86YR6 584 aa24.32■■□□□ 1.48
SDF4-206ENST00000478938 A1CFQ9NQ94 594 aaKnown RBP24.32■■□□□ 1.48
SDF4-206ENST00000478938 ZRANB1Q9UGI0 708 aa24.32■■□□□ 1.48
SDF4-206ENST00000478938 IBSPP21815 317 aaPredicted RBP24.32■■□□□ 1.48
SDF4-206ENST00000478938 INTS13Q9NVM9 706 aa24.32■■□□□ 1.48
SDF4-206ENST00000478938 FANCLQ9NW38 375 aa24.32■■□□□ 1.48
SDF4-206ENST00000478938 GUCY1B3Q02153 619 aa24.31■■□□□ 1.48
SDF4-206ENST00000478938 NMIQ13287 307 aaPredicted RBP24.31■■□□□ 1.48
SDF4-206ENST00000478938 NBPF20Q3BBV1 942 aa24.31■■□□□ 1.48
SDF4-206ENST00000478938 TTC19Q6DKK2 380 aaPredicted RBP24.31■■□□□ 1.48
SDF4-206ENST00000478938 ZKSCAN4Q969J2 545 aaPredicted RBP24.31■■□□□ 1.48
SDF4-206ENST00000478938 RPGRIP1LQ68CZ1 1315 aa24.31■■□□□ 1.48
SDF4-206ENST00000478938 GBP3Q9H0R5 595 aa24.31■■□□□ 1.48
SDF4-206ENST00000478938 MYH15Q9Y2K3 1946 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 ARAP3Q8WWN8 1544 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 SHOX2O60902 331 aaPredicted RBP24.3■■□□□ 1.48
SDF4-206ENST00000478938 ATP2B2Q01814 1243 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 HSP90AA4PQ58FG1 418 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 NPHP4O75161 1426 aaPredicted RBP24.3■■□□□ 1.48
SDF4-206ENST00000478938 IKBKBO14920 756 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 CTCFLQ8NI51 663 aaPredicted RBP24.3■■□□□ 1.48
SDF4-206ENST00000478938 TBC1D22AQ8WUA7 517 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms