RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ATP2B3Q16720 1220 aa19.36■□□□□ 0.69
HMGA1-206ENST00000478214 CREBZFQ9NS37 354 aa19.36■□□□□ 0.69
HMGA1-206ENST00000478214 COG6Q9Y2V7 657 aa19.36■□□□□ 0.69
HMGA1-206ENST00000478214 TMEM88BA6NKF7 163 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 SCARF1Q14162 830 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 POLA2Q14181 598 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 MVPQ14764 893 aaKnown RBP19.35■□□□□ 0.69
HMGA1-206ENST00000478214 CDC37L1Q7L3B6 337 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 USP48Q86UV5 1035 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 GGA3Q9NZ52 723 aa19.35■□□□□ 0.69
HMGA1-206ENST00000478214 F8W031 263 aaPredicted RBP19.34■□□□□ 0.69
HMGA1-206ENST00000478214 FKBP1AP62942 108 aaKnown RBP19.34■□□□□ 0.69
HMGA1-206ENST00000478214 TFCP2Q12800 502 aa19.34■□□□□ 0.69
HMGA1-206ENST00000478214 C20orf194Q5TEA3 1177 aa19.34■□□□□ 0.69
HMGA1-206ENST00000478214 DLK2Q6UY11 383 aa19.34■□□□□ 0.69
HMGA1-206ENST00000478214 SSH3Q8TE77 659 aa19.34■□□□□ 0.69
HMGA1-206ENST00000478214 DCPSQ96C86 337 aaKnown RBP19.34■□□□□ 0.69
HMGA1-206ENST00000478214 FRAT2O75474 233 aaPredicted RBP19.33■□□□□ 0.68
HMGA1-206ENST00000478214 CHAF1AQ13111 956 aaPredicted RBP19.33■□□□□ 0.68
HMGA1-206ENST00000478214 NBPF9Q3BBW0 867 aa19.33■□□□□ 0.68
HMGA1-206ENST00000478214 MFSD14BQ5SR56 506 aa19.33■□□□□ 0.68
HMGA1-206ENST00000478214 ANGEL2Q5VTE6 544 aaKnown RBP19.33■□□□□ 0.68
HMGA1-206ENST00000478214 KRT26Q7Z3Y9 468 aa19.33■□□□□ 0.68
HMGA1-206ENST00000478214 HDAC9Q9UKV0 1011 aa19.33■□□□□ 0.68
HMGA1-206ENST00000478214 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.33■□□□□ 0.68
HMGA1-206ENST00000478214 ADM5C9JUS6 153 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 WNT10BO00744 389 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 ADORA1P30542 326 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 MMP14P50281 582 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 G3BP1Q13283 466 aaKnown RBP eCLIP19.32■□□□□ 0.68
HMGA1-206ENST00000478214 CST9Q5W186 159 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.32■□□□□ 0.68
HMGA1-206ENST00000478214 KLRG1Q96E93 195 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 DDX19BQ9UMR2 479 aa19.32■□□□□ 0.68
HMGA1-206ENST00000478214 TIMM10P62072 90 aa19.31■□□□□ 0.68
HMGA1-206ENST00000478214 CEP85Q6P2H3 762 aa19.31■□□□□ 0.68
HMGA1-206ENST00000478214 CELF2O95319 508 aaKnown RBP19.3■□□□□ 0.68
HMGA1-206ENST00000478214 PDE3AQ14432 1141 aa19.3■□□□□ 0.68
HMGA1-206ENST00000478214 GRIK5Q16478 980 aa19.3■□□□□ 0.68
HMGA1-206ENST00000478214 SULF1Q8IWU6 871 aa19.3■□□□□ 0.68
HMGA1-206ENST00000478214 ZBED3Q96IU2 234 aaPredicted RBP19.3■□□□□ 0.68
HMGA1-206ENST00000478214 ZNF408Q9H9D4 720 aa19.3■□□□□ 0.68
HMGA1-206ENST00000478214 MKRN1Q9UHC7 482 aaKnown RBP19.3■□□□□ 0.68
HMGA1-206ENST00000478214 PCDHAC2Q9Y5I4 1007 aa19.3■□□□□ 0.68
HMGA1-206ENST00000478214 A0A1B0GUL7 405 aa19.29■□□□□ 0.68
HMGA1-206ENST00000478214 SURF6O75683 361 aaKnown RBP19.29■□□□□ 0.68
HMGA1-206ENST00000478214 PHKA1P46020 1223 aa19.29■□□□□ 0.68
HMGA1-206ENST00000478214 ZBTB40Q9NUA8 1239 aa19.29■□□□□ 0.68
HMGA1-206ENST00000478214 SCAF8Q9UPN6 1271 aaKnown RBP19.29■□□□□ 0.68
HMGA1-206ENST00000478214 AKAP2Q9Y2D5 859 aa19.29■□□□□ 0.68
HMGA1-206ENST00000478214 OS9Q13438 667 aaPredicted RBP19.28■□□□□ 0.68
HMGA1-206ENST00000478214 DLGAP5Q15398 846 aa19.28■□□□□ 0.68
HMGA1-206ENST00000478214 CFAP100Q494V2 611 aa19.28■□□□□ 0.68
HMGA1-206ENST00000478214 MTMR14Q8NCE2 650 aa19.28■□□□□ 0.68
HMGA1-206ENST00000478214 TBC1D22AQ8WUA7 517 aa19.28■□□□□ 0.68
HMGA1-206ENST00000478214 ABT1Q9ULW3 272 aaKnown RBP19.28■□□□□ 0.68
HMGA1-206ENST00000478214 TTF2Q9UNY4 1162 aaKnown RBP19.28■□□□□ 0.68
HMGA1-206ENST00000478214 PITPNM2Q9BZ72 1349 aa19.27■□□□□ 0.68
HMGA1-206ENST00000478214 CCDC102BQ68D86 513 aa19.27■□□□□ 0.68
HMGA1-206ENST00000478214 XAGE2Q96GT9 111 aa19.27■□□□□ 0.68
HMGA1-206ENST00000478214 NEUROD6Q96NK8 337 aa19.27■□□□□ 0.68
HMGA1-206ENST00000478214 GNL3LQ9NVN8 582 aaKnown RBP19.27■□□□□ 0.68
HMGA1-206ENST00000478214 NOP58Q9Y2X3 529 aaKnown RBP19.27■□□□□ 0.68
HMGA1-206ENST00000478214 RBM5P52756 815 aaKnown RBP eCLIP19.26■□□□□ 0.67
HMGA1-206ENST00000478214 CNTNAP1P78357 1384 aa19.26■□□□□ 0.67
HMGA1-206ENST00000478214 COL1A1P02452 1464 aaPredicted RBP19.26■□□□□ 0.67
HMGA1-206ENST00000478214 SPDYE2BA6NHP3 402 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 RASSF10A6NK89 507 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 SPDYE6P0CI01 402 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 WDR66Q8TBY9 1149 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 CDCA5Q96FF9 252 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 PRMT6Q96LA8 375 aaPredicted RBP19.25■□□□□ 0.67
HMGA1-206ENST00000478214 CHMP4BQ9H444 224 aaKnown RBP19.25■□□□□ 0.67
HMGA1-206ENST00000478214 AOX1Q06278 1338 aa19.25■□□□□ 0.67
HMGA1-206ENST00000478214 POLR2AP24928 1970 aaKnown RBP19.24■□□□□ 0.67
HMGA1-206ENST00000478214 DEFB115Q30KQ5 88 aa19.24■□□□□ 0.67
HMGA1-206ENST00000478214 JMYQ8N9B5 988 aa19.24■□□□□ 0.67
HMGA1-206ENST00000478214 SERPINA10Q9UK55 444 aa19.24■□□□□ 0.67
HMGA1-206ENST00000478214 TLL2Q9Y6L7 1015 aa19.24■□□□□ 0.67
HMGA1-206ENST00000478214 CLRN2A0PK11 232 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 SEMA3EO15041 775 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 VEGFBP49765 207 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 RRP1P56182 461 aaKnown RBP19.23■□□□□ 0.67
HMGA1-206ENST00000478214 RASGRF1Q13972 1273 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 PRAMEF18Q5VWM3 479 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 SAPCD2Q86UD0 394 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 SIRT2Q8IXJ6 389 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 RPAP2Q8IXW5 612 aaPredicted RBP19.23■□□□□ 0.67
HMGA1-206ENST00000478214 GPR108Q9NPR9 543 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 DENND2AQ9ULE3 1009 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 EXOC6BQ9Y2D4 811 aa19.23■□□□□ 0.67
HMGA1-206ENST00000478214 TRPM7Q96QT4 1865 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 CRKP46108 304 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 TNNI3KQ59H18 835 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 GORABQ5T7V8 394 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 APOBEC3FQ8IUX4 373 aaKnown RBP19.22■□□□□ 0.67
HMGA1-206ENST00000478214 GBA2Q9HCG7 927 aaPredicted RBP19.22■□□□□ 0.67
HMGA1-206ENST00000478214 SUGT1Q9Y2Z0 365 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 FPGT-TNNI3KV9GXZ4 949 aa19.22■□□□□ 0.67
HMGA1-206ENST00000478214 PCNTO95613 3336 aa19.21■□□□□ 0.67
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