RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TDRD7Q8NHU6 1098 aaKnown RBP15.1■□□□□ 0.01
USP40-210ENST00000454354 AIDAQ96BJ3 306 aa15.1■□□□□ 0.01
USP40-210ENST00000454354 SASH1O94885 1247 aa15.09■□□□□ 0.01
USP40-210ENST00000454354 PDE8BO95263 885 aa15.09■□□□□ 0.01
USP40-210ENST00000454354 CTCFP49711 727 aaPredicted RBP15.09■□□□□ 0.01
USP40-210ENST00000454354 INTS3Q68E01 1043 aaKnown RBP15.09■□□□□ 0.01
USP40-210ENST00000454354 C2orf69Q8N8R5 385 aa15.09■□□□□ 0.01
USP40-210ENST00000454354 MTMR14Q8NCE2 650 aa15.09■□□□□ 0.01
USP40-210ENST00000454354 KLHDC4Q8TBB5 520 aa15.09■□□□□ 0.01
USP40-210ENST00000454354 FAM84BQ96KN1 310 aaPredicted RBP15.09■□□□□ 0.01
USP40-210ENST00000454354 AOC2O75106 756 aa15.08■□□□□ 0
USP40-210ENST00000454354 HIBADHP31937 336 aaKnown RBP15.08■□□□□ 0
USP40-210ENST00000454354 GYG1P46976 350 aa15.08■□□□□ 0
USP40-210ENST00000454354 HNRNPUQ00839 825 aaKnown RBP eCLIP15.08■□□□□ 0
USP40-210ENST00000454354 PTPN12Q05209 780 aaKnown RBP15.08■□□□□ 0
USP40-210ENST00000454354 METTL24Q5JXM2 366 aa15.08■□□□□ 0
USP40-210ENST00000454354 PRDM10Q9NQV6 1147 aa15.08■□□□□ 0
USP40-210ENST00000454354 HDAC5Q9UQL6 1122 aa15.08■□□□□ 0
USP40-210ENST00000454354 EYA2O00167 538 aa15.07■□□□□ 0
USP40-210ENST00000454354 FKBP1BP68106 108 aa15.07■□□□□ 0
USP40-210ENST00000454354 GRM1Q13255 1194 aa15.07■□□□□ 0
USP40-210ENST00000454354 RGMBQ6NW40 437 aa15.07■□□□□ 0
USP40-210ENST00000454354 FBXO33Q7Z6M2 555 aa15.07■□□□□ 0
USP40-210ENST00000454354 APOBEC3FQ8IUX4 373 aaKnown RBP15.07■□□□□ 0
USP40-210ENST00000454354 FBXO3Q9UK99 471 aa15.07■□□□□ 0
USP40-210ENST00000454354 FAM155AB1AL88 458 aaPredicted RBP15.06■□□□□ 0
USP40-210ENST00000454354 HSPA8P11142 646 aaKnown RBP15.06■□□□□ 0
USP40-210ENST00000454354 FGFR2P21802 821 aa15.06■□□□□ 0
USP40-210ENST00000454354 NOGQ13253 232 aa15.06■□□□□ 0
USP40-210ENST00000454354 MEIS3Q99687 375 aa15.06■□□□□ 0
USP40-210ENST00000454354 LRRFIP2Q9Y608 721 aaKnown RBP15.06■□□□□ 0
USP40-210ENST00000454354 OTOFQ9HC10 1997 aa15.05■□□□□ 0
USP40-210ENST00000454354 IPO8O15397 1037 aaKnown RBP15.05■□□□□ -0
USP40-210ENST00000454354 BCAR3O75815 825 aa15.05■□□□□ -0
USP40-210ENST00000454354 CIAO1O76071 339 aa15.05■□□□□ -0
USP40-210ENST00000454354 TRIM27P14373 513 aa15.05■□□□□ -0
USP40-210ENST00000454354 PUM3Q15397 648 aaKnown RBP15.05■□□□□ -0
USP40-210ENST00000454354 DLGAP5Q15398 846 aa15.05■□□□□ -0
USP40-210ENST00000454354 MFSD14BQ5SR56 506 aa15.05■□□□□ -0
USP40-210ENST00000454354 ATF7IPQ6VMQ6 1270 aa15.05■□□□□ -0
USP40-210ENST00000454354 ATG9AQ7Z3C6 839 aa15.05■□□□□ -0
USP40-210ENST00000454354 SCAF8Q9UPN6 1271 aaKnown RBP15.05■□□□□ -0
USP40-210ENST00000454354 JAG2Q9Y219 1238 aa15.05■□□□□ -0
USP40-210ENST00000454354 ZBED9Q6R2W3 1325 aa15.05■□□□□ -0
USP40-210ENST00000454354 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
USP40-210ENST00000454354 GNAI3P08754 354 aa15.04■□□□□ -0
USP40-210ENST00000454354 SPDYE6P0CI01 402 aa15.04■□□□□ -0
USP40-210ENST00000454354 CFAP100Q494V2 611 aa15.04■□□□□ -0
USP40-210ENST00000454354 CAVIN4Q5BKX8 364 aa15.04■□□□□ -0
USP40-210ENST00000454354 TNS4Q8IZW8 715 aa15.04■□□□□ -0
USP40-210ENST00000454354 CCDC102AQ96A19 550 aa15.04■□□□□ -0
USP40-210ENST00000454354 CASP8AP2Q9UKL3 1982 aa15.04■□□□□ -0
USP40-210ENST00000454354 F8W031 263 aaPredicted RBP15.03■□□□□ -0
USP40-210ENST00000454354 CA12O43570 354 aa15.03■□□□□ -0
USP40-210ENST00000454354 SLC10A3P09131 477 aa15.03■□□□□ -0
USP40-210ENST00000454354 LBX1P52954 281 aa15.03■□□□□ -0
USP40-210ENST00000454354 MTX1Q13505 466 aa15.03■□□□□ -0
USP40-210ENST00000454354 VPS37DQ86XT2 251 aa15.03■□□□□ -0
USP40-210ENST00000454354 BEGAINQ9BUH8 593 aa15.03■□□□□ -0
USP40-210ENST00000454354 COPRSQ9NQ92 184 aa15.03■□□□□ -0
USP40-210ENST00000454354 SERPINA10Q9UK55 444 aa15.03■□□□□ -0
USP40-210ENST00000454354 PCDHAC2Q9Y5I4 1007 aa15.03■□□□□ -0
USP40-210ENST00000454354 SSC5DA1L4H1 1573 aa15.02■□□□□ -0
USP40-210ENST00000454354 IFIT1P09914 478 aaKnown RBP15.02■□□□□ -0
USP40-210ENST00000454354 ZNF157P51786 506 aaPredicted RBP15.02■□□□□ -0
USP40-210ENST00000454354 PRAMEF18Q5VWM3 479 aa15.02■□□□□ -0
USP40-210ENST00000454354 TBC1D22AQ8WUA7 517 aa15.02■□□□□ -0
USP40-210ENST00000454354 LPIN2Q92539 896 aa15.02■□□□□ -0
USP40-210ENST00000454354 ZIC5Q96T25 663 aa15.02■□□□□ -0
USP40-210ENST00000454354 TNNQ9UQP3 1299 aa15.02■□□□□ -0
USP40-210ENST00000454354 PPP2R3BQ9Y5P8 575 aa15.02■□□□□ -0
USP40-210ENST00000454354 AOX1Q06278 1338 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 MYO1BO43795 1136 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 SLC5A1P13866 664 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 NF2P35240 595 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 IL15P40933 162 aaPredicted RBP15.01□□□□□ -0.01
USP40-210ENST00000454354 BCAMP50895 628 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 RASAL3Q86YV0 1011 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 FRAT1Q92837 279 aaPredicted RBP15.01□□□□□ -0.01
USP40-210ENST00000454354 PRMT6Q96LA8 375 aaPredicted RBP15.01□□□□□ -0.01
USP40-210ENST00000454354 SIL1Q9H173 461 aa15.01□□□□□ -0.01
USP40-210ENST00000454354 TTF2Q9UNY4 1162 aaKnown RBP15.01□□□□□ -0.01
USP40-210ENST00000454354 IQSEC3Q9UPP2 1182 aaPredicted RBP15.01□□□□□ -0.01
USP40-210ENST00000454354 MYH2Q9UKX2 1941 aa15□□□□□ -0.01
USP40-210ENST00000454354 ZBTB22O15209 634 aa15□□□□□ -0.01
USP40-210ENST00000454354 ATP2B3Q16720 1220 aa15□□□□□ -0.01
USP40-210ENST00000454354 ZKSCAN2Q63HK3 967 aa15□□□□□ -0.01
USP40-210ENST00000454354 MOB2Q70IA6 237 aa15□□□□□ -0.01
USP40-210ENST00000454354 DEFB129Q9H1M3 183 aa15□□□□□ -0.01
USP40-210ENST00000454354 CEP126Q9P2H0 1117 aa15□□□□□ -0.01
USP40-210ENST00000454354 PA2G4Q9UQ80 394 aaKnown RBP15□□□□□ -0.01
USP40-210ENST00000454354 FRAT2O75474 233 aaPredicted RBP14.99□□□□□ -0.01
USP40-210ENST00000454354 HDLBPQ00341 1268 aaKnown RBP14.99□□□□□ -0.01
USP40-210ENST00000454354 KIF23Q02241 960 aaPredicted RBP14.99□□□□□ -0.01
USP40-210ENST00000454354 CHAF1AQ13111 956 aaPredicted RBP14.99□□□□□ -0.01
USP40-210ENST00000454354 GRIK5Q16478 980 aa14.99□□□□□ -0.01
USP40-210ENST00000454354 SPDYE2Q495Y8 402 aa14.99□□□□□ -0.01
USP40-210ENST00000454354 SUGT1Q9Y2Z0 365 aa14.99□□□□□ -0.01
USP40-210ENST00000454354 CLRN2A0PK11 232 aa14.98□□□□□ -0.01
USP40-210ENST00000454354 UBE2Q2LH0YL09 131 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms