RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 AOC2O75106 756 aa24.31■■□□□ 1.48
USP40-207ENST00000450940 PDE8BO95263 885 aa24.31■■□□□ 1.48
USP40-207ENST00000450940 HIBADHP31937 336 aaKnown RBP24.31■■□□□ 1.48
USP40-207ENST00000450940 KLHDC4Q8TBB5 520 aa24.31■■□□□ 1.48
USP40-207ENST00000450940 ECM29Q5VYK3 1845 aa24.31■■□□□ 1.48
USP40-207ENST00000450940 UBTFL1P0CB47 393 aaPredicted RBP24.3■■□□□ 1.48
USP40-207ENST00000450940 GYG1P46976 350 aa24.3■■□□□ 1.48
USP40-207ENST00000450940 GRM1Q13255 1194 aa24.3■■□□□ 1.48
USP40-207ENST00000450940 METTL24Q5JXM2 366 aa24.3■■□□□ 1.48
USP40-207ENST00000450940 INTS3Q68E01 1043 aaKnown RBP24.3■■□□□ 1.48
USP40-207ENST00000450940 FBXO33Q7Z6M2 555 aa24.3■■□□□ 1.48
USP40-207ENST00000450940 HDAC5Q9UQL6 1122 aa24.3■■□□□ 1.48
USP40-207ENST00000450940 FKBP1BP68106 108 aa24.29■■□□□ 1.48
USP40-207ENST00000450940 PTPN12Q05209 780 aaKnown RBP24.29■■□□□ 1.48
USP40-207ENST00000450940 RGMBQ6NW40 437 aa24.29■■□□□ 1.48
USP40-207ENST00000450940 FAM155AB1AL88 458 aaPredicted RBP24.28■■□□□ 1.48
USP40-207ENST00000450940 NOGQ13253 232 aa24.28■■□□□ 1.48
USP40-207ENST00000450940 PAPPA2Q9BXP8 1791 aa24.28■■□□□ 1.48
USP40-207ENST00000450940 ARAP2Q8WZ64 1704 aa24.27■■□□□ 1.48
USP40-207ENST00000450940 EYA2O00167 538 aa24.27■■□□□ 1.48
USP40-207ENST00000450940 HSPA8P11142 646 aaKnown RBP24.27■■□□□ 1.48
USP40-207ENST00000450940 HNRNPUQ00839 825 aaKnown RBP eCLIP24.27■■□□□ 1.48
USP40-207ENST00000450940 DLGAP5Q15398 846 aa24.27■■□□□ 1.48
USP40-207ENST00000450940 CCDC102AQ96A19 550 aa24.27■■□□□ 1.48
USP40-207ENST00000450940 FBXO3Q9UK99 471 aa24.27■■□□□ 1.48
USP40-207ENST00000450940 IPO8O15397 1037 aaKnown RBP24.26■■□□□ 1.47
USP40-207ENST00000450940 FGFR2P21802 821 aa24.26■■□□□ 1.47
USP40-207ENST00000450940 APOBEC3FQ8IUX4 373 aaKnown RBP24.26■■□□□ 1.47
USP40-207ENST00000450940 TNS4Q8IZW8 715 aa24.26■■□□□ 1.47
USP40-207ENST00000450940 SCAF8Q9UPN6 1271 aaKnown RBP24.26■■□□□ 1.47
USP40-207ENST00000450940 ATG9AQ7Z3C6 839 aa24.25■■□□□ 1.47
USP40-207ENST00000450940 MEIS3Q99687 375 aa24.25■■□□□ 1.47
USP40-207ENST00000450940 LRRFIP2Q9Y608 721 aaKnown RBP24.25■■□□□ 1.47
USP40-207ENST00000450940 BCAR3O75815 825 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 LBX1P52954 281 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 PUM3Q15397 648 aaKnown RBP24.24■■□□□ 1.47
USP40-207ENST00000450940 CAVIN4Q5BKX8 364 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 MFSD14BQ5SR56 506 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 BEGAINQ9BUH8 593 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 JAG2Q9Y219 1238 aa24.24■■□□□ 1.47
USP40-207ENST00000450940 SPDYE2BA6NHP3 402 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 CIAO1O76071 339 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 SPDYE6P0CI01 402 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 TRIM27P14373 513 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 ZNF157P51786 506 aaPredicted RBP24.23■■□□□ 1.47
USP40-207ENST00000450940 CFAP100Q494V2 611 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 PRAMEF18Q5VWM3 479 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 ATF7IPQ6VMQ6 1270 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 ZIC5Q96T25 663 aa24.23■■□□□ 1.47
USP40-207ENST00000450940 COL1A1P02452 1464 aaPredicted RBP24.23■■□□□ 1.47
USP40-207ENST00000450940 F8W031 263 aaPredicted RBP24.22■■□□□ 1.47
USP40-207ENST00000450940 CA12O43570 354 aa24.22■■□□□ 1.47
USP40-207ENST00000450940 GNAI3P08754 354 aa24.22■■□□□ 1.47
USP40-207ENST00000450940 VPS37DQ86XT2 251 aa24.22■■□□□ 1.47
USP40-207ENST00000450940 PRMT6Q96LA8 375 aaPredicted RBP24.22■■□□□ 1.47
USP40-207ENST00000450940 PCDHAC2Q9Y5I4 1007 aa24.22■■□□□ 1.47
USP40-207ENST00000450940 SLC10A3P09131 477 aa24.21■■□□□ 1.47
USP40-207ENST00000450940 IFIT1P09914 478 aaKnown RBP24.21■■□□□ 1.47
USP40-207ENST00000450940 COPRSQ9NQ92 184 aa24.21■■□□□ 1.47
USP40-207ENST00000450940 SERPINA10Q9UK55 444 aa24.21■■□□□ 1.47
USP40-207ENST00000450940 BCAMP50895 628 aa24.2■■□□□ 1.46
USP40-207ENST00000450940 LPIN2Q92539 896 aa24.2■■□□□ 1.46
USP40-207ENST00000450940 NF2P35240 595 aa24.19■■□□□ 1.46
USP40-207ENST00000450940 MTX1Q13505 466 aa24.19■■□□□ 1.46
USP40-207ENST00000450940 TBC1D22AQ8WUA7 517 aa24.19■■□□□ 1.46
USP40-207ENST00000450940 DEFB129Q9H1M3 183 aa24.19■■□□□ 1.46
USP40-207ENST00000450940 TTF2Q9UNY4 1162 aaKnown RBP24.19■■□□□ 1.46
USP40-207ENST00000450940 PPP2R3BQ9Y5P8 575 aa24.19■■□□□ 1.46
USP40-207ENST00000450940 MYH13Q9UKX3 1938 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 AOX1Q06278 1338 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 ZBED9Q6R2W3 1325 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 MYO1BO43795 1136 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 SLC5A1P13866 664 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 MOB2Q70IA6 237 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 FRAT1Q92837 279 aaPredicted RBP24.18■■□□□ 1.46
USP40-207ENST00000450940 IQSEC3Q9UPP2 1182 aaPredicted RBP24.18■■□□□ 1.46
USP40-207ENST00000450940 TNNQ9UQP3 1299 aa24.18■■□□□ 1.46
USP40-207ENST00000450940 UBE2Q2LH0YL09 131 aa24.17■■□□□ 1.46
USP40-207ENST00000450940 IL15P40933 162 aaPredicted RBP24.17■■□□□ 1.46
USP40-207ENST00000450940 HDLBPQ00341 1268 aaKnown RBP24.17■■□□□ 1.46
USP40-207ENST00000450940 KIF23Q02241 960 aaPredicted RBP24.17■■□□□ 1.46
USP40-207ENST00000450940 RASAL3Q86YV0 1011 aa24.17■■□□□ 1.46
USP40-207ENST00000450940 SIL1Q9H173 461 aa24.17■■□□□ 1.46
USP40-207ENST00000450940 CEP126Q9P2H0 1117 aa24.17■■□□□ 1.46
USP40-207ENST00000450940 AKAP11Q9UKA4 1901 aa24.16■■□□□ 1.46
USP40-207ENST00000450940 GRIK5Q16478 980 aa24.16■■□□□ 1.46
USP40-207ENST00000450940 MRIQ9BWK5 157 aa24.16■■□□□ 1.46
USP40-207ENST00000450940 ZBTB22O15209 634 aa24.15■■□□□ 1.46
USP40-207ENST00000450940 FRAT2O75474 233 aaPredicted RBP24.15■■□□□ 1.46
USP40-207ENST00000450940 RBM5P52756 815 aaKnown RBP eCLIP24.15■■□□□ 1.46
USP40-207ENST00000450940 CHAF1AQ13111 956 aaPredicted RBP24.15■■□□□ 1.46
USP40-207ENST00000450940 ZKSCAN2Q63HK3 967 aa24.15■■□□□ 1.46
USP40-207ENST00000450940 REM2Q8IYK8 340 aaPredicted RBP24.15■■□□□ 1.46
USP40-207ENST00000450940 PA2G4Q9UQ80 394 aaKnown RBP24.15■■□□□ 1.46
USP40-207ENST00000450940 SUGT1Q9Y2Z0 365 aa24.15■■□□□ 1.46
USP40-207ENST00000450940 CLRN2A0PK11 232 aa24.14■■□□□ 1.45
USP40-207ENST00000450940 CRKP46108 304 aa24.14■■□□□ 1.45
USP40-207ENST00000450940 ATP2B3Q16720 1220 aa24.14■■□□□ 1.45
USP40-207ENST00000450940 SPDYE2Q495Y8 402 aa24.14■■□□□ 1.45
USP40-207ENST00000450940 LDLRAD1Q5T700 205 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms