RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 COL1A1P02452 1464 aaPredicted RBP18.36■□□□□ 0.53
SDC1-204ENST00000429035 CERS5Q8N5B7 392 aa18.36■□□□□ 0.53
SDC1-204ENST00000429035 SRCIN1Q9C0H9 1055 aa18.36■□□□□ 0.53
SDC1-204ENST00000429035 IRS2Q9Y4H2 1338 aa18.35■□□□□ 0.53
SDC1-204ENST00000429035 CLRN2A0PK11 232 aa18.35■□□□□ 0.53
SDC1-204ENST00000429035 RBM5P52756 815 aaKnown RBP eCLIP18.35■□□□□ 0.533e-7■■■■□ 25.8
SDC1-204ENST00000429035 REM2Q8IYK8 340 aaPredicted RBP18.35■□□□□ 0.53
SDC1-204ENST00000429035 VEZTQ9HBM0 779 aa18.35■□□□□ 0.53
SDC1-204ENST00000429035 ANGEL1Q9UNK9 670 aaKnown RBP18.35■□□□□ 0.53
SDC1-204ENST00000429035 FZD1Q9UP38 647 aa18.35■□□□□ 0.53
SDC1-204ENST00000429035 PCDHAC2Q9Y5I4 1007 aa18.35■□□□□ 0.53
SDC1-204ENST00000429035 ALDH1L1O75891 902 aa18.34■□□□□ 0.53
SDC1-204ENST00000429035 MMP14P50281 582 aa18.34■□□□□ 0.53
SDC1-204ENST00000429035 CFAP100Q494V2 611 aa18.34■□□□□ 0.53
SDC1-204ENST00000429035 SUCLG2Q96I99 432 aa18.34■□□□□ 0.53
SDC1-204ENST00000429035 MYO1BO43795 1136 aa18.33■□□□□ 0.52
SDC1-204ENST00000429035 TBC1D8O95759 1140 aa18.33■□□□□ 0.52
SDC1-204ENST00000429035 C15orf52Q6ZUT6 534 aaKnown RBP18.33■□□□□ 0.52
SDC1-204ENST00000429035 CTU1Q7Z7A3 348 aaKnown RBP18.33■□□□□ 0.52
SDC1-204ENST00000429035 IL1R1P14778 569 aa18.32■□□□□ 0.52
SDC1-204ENST00000429035 PTPN12Q05209 780 aaKnown RBP18.32■□□□□ 0.52
SDC1-204ENST00000429035 ZBED3Q96IU2 234 aaPredicted RBP18.32■□□□□ 0.52
SDC1-204ENST00000429035 DEFB129Q9H1M3 183 aa18.32■□□□□ 0.52
SDC1-204ENST00000429035 OTOFQ9HC10 1997 aa18.31■□□□□ 0.52
SDC1-204ENST00000429035 MYH13Q9UKX3 1938 aa18.31■□□□□ 0.52
SDC1-204ENST00000429035 SSC5DA1L4H1 1573 aa18.31■□□□□ 0.52
SDC1-204ENST00000429035 SOX10P56693 466 aa18.31■□□□□ 0.52
SDC1-204ENST00000429035 SREBF2Q12772 1141 aa18.31■□□□□ 0.52
SDC1-204ENST00000429035 GYG1P46976 350 aa18.3■□□□□ 0.52
SDC1-204ENST00000429035 PUS3Q9BZE2 481 aaKnown RBP18.3■□□□□ 0.52
SDC1-204ENST00000429035 SPDYE2BA6NHP3 402 aa18.29■□□□□ 0.52
SDC1-204ENST00000429035 NBPF7P0C2Y1 421 aaPredicted RBP18.29■□□□□ 0.52
SDC1-204ENST00000429035 SPDYE6P0CI01 402 aa18.29■□□□□ 0.52
SDC1-204ENST00000429035 MFSD14BQ5SR56 506 aa18.29■□□□□ 0.52
SDC1-204ENST00000429035 VPS37DQ86XT2 251 aa18.29■□□□□ 0.52
SDC1-204ENST00000429035 ZNF296Q8WUU4 475 aaPredicted RBP18.29■□□□□ 0.52
SDC1-204ENST00000429035 BICC1Q9H694 974 aaKnown RBP18.29■□□□□ 0.52
SDC1-204ENST00000429035 AOX1Q06278 1338 aa18.28■□□□□ 0.52
SDC1-204ENST00000429035 RGS19P49795 217 aa18.28■□□□□ 0.52
SDC1-204ENST00000429035 FKBP1AP62942 108 aaKnown RBP18.28■□□□□ 0.52
SDC1-204ENST00000429035 CHAF1AQ13111 956 aaPredicted RBP18.28■□□□□ 0.52
SDC1-204ENST00000429035 MTMR14Q8NCE2 650 aa18.28■□□□□ 0.52
SDC1-204ENST00000429035 PRMT6Q96LA8 375 aaPredicted RBP18.28■□□□□ 0.52
SDC1-204ENST00000429035 TTF2Q9UNY4 1162 aaKnown RBP18.28■□□□□ 0.52
SDC1-204ENST00000429035 IQSEC3Q9UPP2 1182 aaPredicted RBP18.28■□□□□ 0.52
SDC1-204ENST00000429035 PPP2R3BQ9Y5P8 575 aa18.28■□□□□ 0.52
SDC1-204ENST00000429035 PPP1R12BO60237 982 aaPredicted RBP18.27■□□□□ 0.52
SDC1-204ENST00000429035 HIBADHP31937 336 aaKnown RBP18.27■□□□□ 0.52
SDC1-204ENST00000429035 UBE4AQ14139 1066 aa18.27■□□□□ 0.52
SDC1-204ENST00000429035 METTL24Q5JXM2 366 aa18.27■□□□□ 0.52
SDC1-204ENST00000429035 SPRYD7Q5W111 196 aa18.27■□□□□ 0.52
SDC1-204ENST00000429035 MRPL50Q8N5N7 158 aaKnown RBP18.27■□□□□ 0.52
SDC1-204ENST00000429035 KAZALD1Q96I82 304 aa18.27■□□□□ 0.52
SDC1-204ENST00000429035 MROH5Q6ZUA9 1318 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 ZNF521Q96K83 1311 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 FRAT2O75474 233 aaPredicted RBP18.26■□□□□ 0.51
SDC1-204ENST00000429035 TM4SF4P48230 202 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 NBPF12Q5TAG4 269 aaPredicted RBP18.26■□□□□ 0.51
SDC1-204ENST00000429035 SLC10A4Q96EP9 437 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 CLMNQ96JQ2 1002 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 LAMB1P07942 1786 aa18.26■□□□□ 0.51
SDC1-204ENST00000429035 FAM205AQ6ZU69 1335 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 GPR25O00155 361 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 SUPT20HL1Q3ZLR7 823 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 LRRC24Q50LG9 513 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 LDLRAD1Q5T700 205 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 TDRD7Q8NHU6 1098 aaKnown RBP18.25■□□□□ 0.51
SDC1-204ENST00000429035 WNK4Q96J92 1243 aa18.25■□□□□ 0.51
SDC1-204ENST00000429035 PTPRCP08575 1304 aa18.24■□□□□ 0.51
SDC1-204ENST00000429035 E9PSI1 815 aa18.24■□□□□ 0.51
SDC1-204ENST00000429035 IREB2P48200 963 aaKnown RBP18.24■□□□□ 0.51
SDC1-204ENST00000429035 TNFAIP1Q13829 316 aa18.24■□□□□ 0.51
SDC1-204ENST00000429035 RASA3Q14644 834 aa18.24■□□□□ 0.51
SDC1-204ENST00000429035 FAM84BQ96KN1 310 aaPredicted RBP18.24■□□□□ 0.51
SDC1-204ENST00000429035 TDRD3Q9H7E2 651 aaKnown RBP18.24■□□□□ 0.51
SDC1-204ENST00000429035 HPS5Q9UPZ3 1129 aa18.24■□□□□ 0.51
SDC1-204ENST00000429035 UTYO14607 1347 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 MANSC4A6NHS7 340 aaPredicted RBP18.23■□□□□ 0.51
SDC1-204ENST00000429035 TCP10L2B9ZVM9 353 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 ANKRD44Q8N8A2 993 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 KLHDC4Q8TBB5 520 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 SSH1Q8WYL5 1049 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 ZNF70Q9UC06 446 aaPredicted RBP18.23■□□□□ 0.51
SDC1-204ENST00000429035 RIPOR2Q9Y4F9 1068 aa18.23■□□□□ 0.51
SDC1-204ENST00000429035 FKTNO75072 461 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 CRKP46108 304 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 MAP3K11Q16584 847 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 RABL6Q3YEC7 729 aaPredicted RBP18.22■□□□□ 0.51
SDC1-204ENST00000429035 SPDYE2Q495Y8 402 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 CAVIN4Q5BKX8 364 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 SERPINA10Q9UK55 444 aa18.22■□□□□ 0.51
SDC1-204ENST00000429035 ALDH1A1P00352 501 aa18.21■□□□□ 0.51
SDC1-204ENST00000429035 ZBTB48P10074 688 aaPredicted RBP18.21■□□□□ 0.51
SDC1-204ENST00000429035 PKN2Q16513 984 aaKnown RBP18.21■□□□□ 0.51
SDC1-204ENST00000429035 DZIP1LQ8IYY4 767 aaKnown RBP18.21■□□□□ 0.51
SDC1-204ENST00000429035 R3HDMLQ9H3Y0 253 aa18.21■□□□□ 0.51
SDC1-204ENST00000429035 SMC4Q9NTJ3 1288 aa18.21■□□□□ 0.51
SDC1-204ENST00000429035 PDE4DIPQ5VU43 2346 aa18.21■□□□□ 0.51
SDC1-204ENST00000429035 GRIK5Q16478 980 aa18.2■□□□□ 0.5
SDC1-204ENST00000429035 IFNL1Q8IU54 200 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms