RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CCL5P13501 91 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 NPR1P16066 1061 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 IRS1P35568 1242 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 NCBP1Q09161 790 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ANKRD13AQ8IZ07 590 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 CYP2W1Q8TAV3 490 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 LGMNQ99538 433 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 CNNM1Q9NRU3 951 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 GINS2Q9Y248 185 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ABCA2Q9BZC7 2435 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 USP17L8P0C7I0 530 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 EIF2S2P20042 333 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 RASEFQ8IZ41 740 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 EPS8L1Q8TE68 723 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 ZCCHC14Q8WYQ9 949 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 CDC5LQ99459 802 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 INTS2Q9H0H0 1204 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 CDHR5Q9HBB8 845 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SAGE1Q9NXZ1 904 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 TRMT112Q9UI30 125 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 KRT17Q04695 432 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 AIMP1Q12904 312 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 KMT5BQ4FZB7 885 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 C2orf27AQ580R0 203 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 FBXO22Q8NEZ5 403 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SP7Q8TDD2 431 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 PNNQ9H307 717 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 ELP3Q9H9T3 547 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SNRKQ9NRH2 765 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 MTORP42345 2549 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 ZSCAN5CA6NGD5 496 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SHISA7A6NL88 538 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 J3QKU1 62 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 ARHGAP6O43182 974 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 UFL1O94874 794 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SUPT20HL2P0C7V6 817 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 GMPSP49915 693 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 DUSP27Q5VZP5 1158 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 SECISBP2Q96T21 854 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 CDX2Q99626 313 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 STK31Q9BXU1 1019 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 MTMR7Q9Y216 660 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 EMILIN1Q9Y6C2 1016 aa3.34□□□□□ -1.87
CCDC88A-205ENST00000426576 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 DIAPH1O60610 1272 aaKnown RBP3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 PDE4BQ07343 736 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 CAVIN4Q5BKX8 364 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC26Q8TAB7 109 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 ANKRD24Q8TF21 1146 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 RUNDC1Q96C34 613 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC97Q96F63 343 aaPredicted RBP3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 FUBP3Q96I24 572 aaKnown RBP eCLIP3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 LRFN3Q9BTN0 628 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 SLC29A3Q9BZD2 475 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.34□□□□□ -1.883e-7■■■■□ 26
CCDC88A-205ENST00000426576 GGT7Q9UJ14 662 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNRF3Q9ULT6 936 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 PTCH1Q13635 1447 aa3.34□□□□□ -1.88
CCDC88A-205ENST00000426576 EPRSP07814 1512 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 TP53P04637 393 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 MS4A1P11836 297 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 PDCP20941 246 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 CASP6P55212 293 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 LMOD3Q0VAK6 560 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 IDI1Q13907 227 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SLC4A10Q6U841 1118 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 DEFB128Q7Z7B8 93 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 CPA4Q9UI42 421 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 NR2E1Q9Y466 385 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 TTC37Q6PGP7 1564 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 NBASA2RRP1 2371 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 TRAF5O00463 557 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 GPTP24298 496 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 RGS2P41220 211 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SEPT6Q14141 434 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 LPAL2Q16609 132 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 DCAF6Q58WW2 860 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 NCAPG2Q86XI2 1143 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 CHTF18Q8WVB6 975 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 GCNAQ96QF7 691 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 GTPBP2Q9BX10 602 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 GGA1Q9UJY5 639 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 RIPOR2Q9Y4F9 1068 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 ACACAQ13085 2346 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 KNL1Q8NG31 2342 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC144AA2RUR9 1427 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SPAG17Q6Q759 2223 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 DCDC2BA2VCK2 349 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 CFIP05156 583 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 YBX3P16989 372 aaKnown RBP eCLIP3.33□□□□□ -1.881e-6■■□□□ 11.8
CCDC88A-205ENST00000426576 FECHP22830 423 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 AVPR2P30518 371 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 PER3P56645 1201 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 BFSP2Q13515 415 aa3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SMC1AQ14683 1233 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SCG3Q8WXD2 468 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 PRCCQ92733 491 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 SONP18583 2426 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 GOLGA4Q13439 2230 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-205ENST00000426576 MIA2Q96PC5 1412 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms