RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 ITPKAP23677 461 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 CDC25BP30305 580 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 GSTT1P30711 240 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 BAG6P46379 1132 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 PTPN12Q05209 780 aaKnown RBP4.47□□□□□ -1.69
VPS41-206ENST00000418457 FAM117BQ6P1L5 589 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 DMRTC2Q8IXT2 367 aaPredicted RBP4.47□□□□□ -1.69
VPS41-206ENST00000418457 TRIM11Q96F44 468 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 PLVAPQ9BX97 442 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 ZFYVE1Q9HBF4 777 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 NOP53Q9NZM5 478 aaKnown RBP4.47□□□□□ -1.69
VPS41-206ENST00000418457 STK17AQ9UEE5 414 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 VTI1BQ9UEU0 232 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 LINC01387J3KSC0 135 aa4.46□□□□□ -1.7
VPS41-206ENST00000418457 RAC1P63000 192 aa4.46□□□□□ -1.7
VPS41-206ENST00000418457 VN1R5Q7Z5H4 357 aa4.46□□□□□ -1.7
VPS41-206ENST00000418457 CLEC4MQ9H2X3 399 aaPredicted RBP4.46□□□□□ -1.7
VPS41-206ENST00000418457 ZNF576Q9H609 170 aa4.46□□□□□ -1.7
VPS41-206ENST00000418457 AKAP2Q9Y2D5 859 aa4.46□□□□□ -1.7
VPS41-206ENST00000418457 A0A0A0MRY4 1105 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 ESRRAP11474 423 aaPredicted RBP4.45□□□□□ -1.7
VPS41-206ENST00000418457 ARL4DP49703 201 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 PCDH1Q08174 1060 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 TRIM28Q13263 835 aaKnown RBP4.45□□□□□ -1.7
VPS41-206ENST00000418457 IKBKEQ14164 716 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 RPS26P11Q5JNZ5 115 aaPredicted RBP4.45□□□□□ -1.7
VPS41-206ENST00000418457 TXNDC11Q6PKC3 985 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 ILDR2Q71H61 639 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 MAP4K3Q8IVH8 894 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 DTWD1Q8N5C7 304 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 C3orf58Q8NDZ4 430 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 WNT8BQ93098 351 aa4.45□□□□□ -1.7
VPS41-206ENST00000418457 SRA1Q9HD15 236 aaKnown RBP4.45□□□□□ -1.7
VPS41-206ENST00000418457 FAM229AH3BQW9 127 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 RNF225M0QZC1 329 aaPredicted RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 SOX1O00570 391 aaPredicted RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 FSCN2O14926 492 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 RBM25P49756 843 aaKnown RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 PIP4K2BP78356 416 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 MRPL58Q14197 206 aaKnown RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 SETDB1Q15047 1291 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 PRRT3Q5FWE3 981 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 FMR1NBQ8N0W7 255 aaPredicted RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 KLHL23Q8NBE8 558 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 DCAF11Q8TEB1 546 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 SLC7A3Q8WY07 619 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 MRRFQ96E11 262 aaKnown RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 CRELD1Q96HD1 420 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 OSGEPQ9NPF4 335 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 GPN3Q9UHW5 284 aaPredicted RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 PPM1HQ9ULR3 514 aa4.44□□□□□ -1.7
VPS41-206ENST00000418457 TTF2Q9UNY4 1162 aaKnown RBP4.44□□□□□ -1.7
VPS41-206ENST00000418457 UNCXA6NJT0 531 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 B3GALT4O96024 378 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 CTSHP09668 335 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 C19orf57Q0VDD7 668 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 FAAP100Q0VG06 881 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 ZNF423Q2M1K9 1284 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 TPTE2Q6XPS3 522 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 FBXO11Q86XK2 927 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 DDX54Q8TDD1 881 aaKnown RBP4.43□□□□□ -1.7
VPS41-206ENST00000418457 ZNF428Q96B54 188 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 CARD10Q9BWT7 1032 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 SOX17Q9H6I2 414 aaPredicted RBP4.43□□□□□ -1.7
VPS41-206ENST00000418457 SEC31BQ9NQW1 1179 aa4.43□□□□□ -1.7
VPS41-206ENST00000418457 EIF4EBP3O60516 100 aaPredicted RBP4.42□□□□□ -1.7
VPS41-206ENST00000418457 DEAF1O75398 565 aaPredicted RBP4.42□□□□□ -1.7
VPS41-206ENST00000418457 SPATA31C1P0DKV0 1188 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 ELNP15502 786 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 VAMP1P23763 118 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 COL8A1P27658 744 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 ZNF157P51786 506 aaPredicted RBP4.42□□□□□ -1.7
VPS41-206ENST00000418457 GSTM4Q03013 218 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 PPP2R3AQ06190 1150 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 SUZ12Q15022 739 aaKnown RBP4.42□□□□□ -1.7
VPS41-206ENST00000418457 TAF1CQ15572 869 aaPredicted RBP4.42□□□□□ -1.7
VPS41-206ENST00000418457 MEI1Q5TIA1 1274 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 HGSNATQ68CP4 663 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 GALNT11Q8NCW6 608 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 ANKRD24Q8TF21 1146 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 KLHDC7BQ96G42 594 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 CEP44Q9C0F1 390 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 TMEM39AQ9NV64 488 aa4.42□□□□□ -1.7
VPS41-206ENST00000418457 DLL1O00548 723 aa4.41□□□□□ -1.7
VPS41-206ENST00000418457 FBXO24O75426 580 aa4.41□□□□□ -1.7
VPS41-206ENST00000418457 CD68P34810 354 aaPredicted RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 ST13P50502 369 aaKnown RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 TSNAXIP1Q2TAA8 658 aa4.41□□□□□ -1.7
VPS41-206ENST00000418457 FOXD4L6Q3SYB3 417 aaPredicted RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 FOXD4L3Q6VB84 417 aaPredicted RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 ALYREFQ86V81 257 aaKnown RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 TMEM87AQ8NBN3 555 aa4.41□□□□□ -1.7
VPS41-206ENST00000418457 NECAB3Q96P71 396 aaPredicted RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 KIAA1522Q9P206 1035 aaPredicted RBP4.41□□□□□ -1.7
VPS41-206ENST00000418457 USP31Q70CQ4 1352 aa4.4□□□□□ -1.7
VPS41-206ENST00000418457 TM4SF5O14894 197 aa4.4□□□□□ -1.71
VPS41-206ENST00000418457 RECKO95980 971 aa4.4□□□□□ -1.71
VPS41-206ENST00000418457 APBA3O96018 575 aa4.4□□□□□ -1.71
VPS41-206ENST00000418457 NLRP12P59046 1061 aa4.4□□□□□ -1.71
VPS41-206ENST00000418457 AP3B2Q13367 1082 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms