RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 RRP9O43818 475 aaKnown RBP5.76□□□□□ -1.49
SF3B1-202ENST00000409915 CREB3O43889 395 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 APBA3O96018 575 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 NR1H3Q13133 447 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 SF3B2Q13435 895 aaKnown RBP5.76□□□□□ -1.49
SF3B1-202ENST00000409915 FAM174AQ8TBP5 190 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 SYTL4Q96C24 671 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-202ENST00000409915 FAM161BQ96MY7 647 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 PLCD4Q9BRC7 762 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 UBA5Q9GZZ9 404 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 PCDH12Q9NPG4 1184 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 KDRP35968 1356 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 TOGARAM1Q9Y4F4 1720 aa5.76□□□□□ -1.49
SF3B1-202ENST00000409915 NHSQ6T4R5 1651 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 PCDH11XQ9BZA7 1347 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 PCDH11YQ9BZA8 1340 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 PPEF1O14829 653 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 ZNF76P36508 570 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 GGCXP38435 758 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 BAG6P46379 1132 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 ARHGAP4P98171 946 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 ARID5AQ03989 594 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 FUT2Q10981 343 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 NCOA4Q13772 614 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 EZH2Q15910 746 aaKnown RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 ECM1Q16610 540 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 ZNF530Q6P9A1 599 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 TAS1R3Q7RTX0 852 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 RNF135Q8IUD6 432 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 CCDC146Q8IYE0 955 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 RDH13Q8NBN7 331 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 HLA-CQ95604 372 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 CFAP53Q96M91 514 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 SPOCK3Q9BQ16 436 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 IRF2BPLQ9H1B7 796 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 IFT57Q9NWB7 429 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 CXXC1Q9P0U4 656 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 G3BP2Q9UN86 482 aaKnown RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-202ENST00000409915 SBF2Q86WG5 1849 aa5.75□□□□□ -1.49
SF3B1-202ENST00000409915 MYBBP1AQ9BQG0 1328 aaKnown RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 BCL9O00512 1426 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 HOXA2O43364 376 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 S1PR4O95977 384 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 PHKG2P15735 406 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 PRKAR2BP31323 418 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 MTMR2Q13614 643 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 FOXD4L6Q3SYB3 417 aaPredicted RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 FOXD4L3Q6VB84 417 aaPredicted RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 CCAR1Q8IX12 1150 aaKnown RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 EVI5LQ96CN4 794 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 SGSM3Q96HU1 749 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 PRKRIP1Q9H875 184 aaPredicted RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 PRDM10Q9NQV6 1147 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 PCDHGC3Q9UN70 934 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 SPG7Q9UQ90 795 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 LAS1LQ9Y4W2 734 aaKnown RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 BTAF1O14981 1849 aa5.74□□□□□ -1.49
SF3B1-202ENST00000409915 KDM6AO15550 1401 aaPredicted RBP5.74□□□□□ -1.49
SF3B1-202ENST00000409915 CFAP99D6REC4 459 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 RNF223E7ERA6 249 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 PPFIA4O75335 1185 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 FMNL1O95466 1100 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 S100BP04271 92 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 FBXO45P0C2W1 286 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 U2AF1L5P0DN76 240 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 KCNQ4P56696 695 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 U2AF1Q01081 240 aaKnown RBP eCLIP5.73□□□□□ -1.491e-13■■□□□ 13.1
SF3B1-202ENST00000409915 GUCA2AQ02747 115 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 MTHFSDQ2M296 383 aaKnown RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 SLFNL1Q499Z3 407 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 PLEKHO1Q53GL0 409 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 RPUSD2Q8IZ73 545 aaKnown RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 FAM43AQ8N2R8 423 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 GTF3C2Q8WUA4 911 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 ZNF594Q96JF6 807 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 PRIMPOLQ96LW4 560 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 CAMKK2Q96RR4 588 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 VTI1BQ9UEU0 232 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 PARP2Q9UGN5 583 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 INPP5FQ9Y2H2 1132 aa5.73□□□□□ -1.49
SF3B1-202ENST00000409915 DNMT3AQ9Y6K1 912 aaPredicted RBP5.73□□□□□ -1.49
SF3B1-202ENST00000409915 SRCAPQ6ZRS2 3230 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 RREB1Q92766 1687 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 NUP188Q5SRE5 1749 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 LCE2BO14633 110 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 SORBS3O60504 671 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 DNAJC6O75061 913 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 STK10O94804 968 aaKnown RBP5.72□□□□□ -1.49
SF3B1-202ENST00000409915 PTMSP20962 102 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 FKBP4Q02790 459 aaKnown RBP eCLIP5.72□□□□□ -1.49
SF3B1-202ENST00000409915 MTMR3Q13615 1198 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 LAPTM4AQ15012 233 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 OCLNQ16625 522 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 KMT5BQ4FZB7 885 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 CCDC184Q52MB2 194 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 PLA2G2CQ5R387 149 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 MORN1Q5T089 497 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 MPRIPQ6WCQ1 1025 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms