RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 IPO8O15397 1037 aaKnown RBP16.66■□□□□ 0.26
SDF4-203ENST00000403997 AOC2O75106 756 aa16.66■□□□□ 0.26
SDF4-203ENST00000403997 SASH1O94885 1247 aa16.66■□□□□ 0.26
SDF4-203ENST00000403997 MAP2K2P36507 400 aa16.66■□□□□ 0.26
SDF4-203ENST00000403997 CTCFP49711 727 aaPredicted RBP16.66■□□□□ 0.26
SDF4-203ENST00000403997 FAM84BQ96KN1 310 aaPredicted RBP16.66■□□□□ 0.26
SDF4-203ENST00000403997 BCAR3O75815 825 aa16.65■□□□□ 0.26
SDF4-203ENST00000403997 PDE8BO95263 885 aa16.65■□□□□ 0.26
SDF4-203ENST00000403997 FKBP1AP62942 108 aaKnown RBP16.65■□□□□ 0.26
SDF4-203ENST00000403997 DLGAP5Q15398 846 aa16.65■□□□□ 0.26
SDF4-203ENST00000403997 VPS37DQ86XT2 251 aa16.65■□□□□ 0.26
SDF4-203ENST00000403997 TDRD7Q8NHU6 1098 aaKnown RBP16.65■□□□□ 0.26
SDF4-203ENST00000403997 BEGAINQ9BUH8 593 aa16.65■□□□□ 0.26
SDF4-203ENST00000403997 RFX5P48382 616 aaPredicted RBP16.64■□□□□ 0.25
SDF4-203ENST00000403997 CAVIN4Q5BKX8 364 aa16.64■□□□□ 0.25
SDF4-203ENST00000403997 PRAMEF18Q5VWM3 479 aa16.64■□□□□ 0.25
SDF4-203ENST00000403997 RGMBQ6NW40 437 aa16.64■□□□□ 0.25
SDF4-203ENST00000403997 FRAT1Q92837 279 aaPredicted RBP16.64■□□□□ 0.25
SDF4-203ENST00000403997 LRRFIP2Q9Y608 721 aaKnown RBP16.64■□□□□ 0.25
SDF4-203ENST00000403997 EYA2O00167 538 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 FRAT2O75474 233 aaPredicted RBP16.63■□□□□ 0.25
SDF4-203ENST00000403997 ZNF157P51786 506 aaPredicted RBP16.63■□□□□ 0.25
SDF4-203ENST00000403997 PTPN12Q05209 780 aaKnown RBP16.63■□□□□ 0.25
SDF4-203ENST00000403997 INTS3Q68E01 1043 aaKnown RBP16.63■□□□□ 0.25
SDF4-203ENST00000403997 FBXO33Q7Z6M2 555 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 VGLL2Q8N8G2 317 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 MEIS3Q99687 375 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 A0A1B0GUL6 1792 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
SDF4-203ENST00000403997 LBX1P52954 281 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 NOGQ13253 232 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 CFAP100Q494V2 611 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 MFSD14BQ5SR56 506 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 APOBEC3FQ8IUX4 373 aaKnown RBP16.62■□□□□ 0.25
SDF4-203ENST00000403997 CCDC102AQ96A19 550 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 ZBED3Q96IU2 234 aaPredicted RBP16.62■□□□□ 0.25
SDF4-203ENST00000403997 PRDM10Q9NQV6 1147 aa16.62■□□□□ 0.25
SDF4-203ENST00000403997 IQSEC3Q9UPP2 1182 aaPredicted RBP16.62■□□□□ 0.25
SDF4-203ENST00000403997 ZNF646O15015 1829 aaPredicted RBP16.61■□□□□ 0.25
SDF4-203ENST00000403997 GNAI3P08754 354 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 IFIT1P09914 478 aaKnown RBP16.61■□□□□ 0.25
SDF4-203ENST00000403997 NF2P35240 595 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 RBM5P52756 815 aaKnown RBP eCLIP16.61■□□□□ 0.258e-6■■■■□ 20.7
SDF4-203ENST00000403997 PUM3Q15397 648 aaKnown RBP16.61■□□□□ 0.25
SDF4-203ENST00000403997 ATF7IPQ6VMQ6 1270 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 MTMR14Q8NCE2 650 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 SIL1Q9H173 461 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 PCDHAC2Q9Y5I4 1007 aa16.61■□□□□ 0.25
SDF4-203ENST00000403997 MYO1BO43795 1136 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 HSPA8P11142 646 aaKnown RBP16.6■□□□□ 0.25
SDF4-203ENST00000403997 TRIM27P14373 513 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 BCAMP50895 628 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 FKBP1BP68106 108 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 CHAF1AQ13111 956 aaPredicted RBP16.6■□□□□ 0.25
SDF4-203ENST00000403997 TTLL12Q14166 644 aaPredicted RBP16.6■□□□□ 0.25
SDF4-203ENST00000403997 ATG9AQ7Z3C6 839 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 CLUAP1Q96AJ1 413 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 PRMT6Q96LA8 375 aaPredicted RBP16.6■□□□□ 0.25
SDF4-203ENST00000403997 ZIC5Q96T25 663 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 TTF2Q9UNY4 1162 aaKnown RBP16.6■□□□□ 0.25
SDF4-203ENST00000403997 TNNQ9UQP3 1299 aa16.6■□□□□ 0.25
SDF4-203ENST00000403997 FAM155AB1AL88 458 aaPredicted RBP16.59■□□□□ 0.25
SDF4-203ENST00000403997 UBE2Q2LH0YL09 131 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 SLC5A1P13866 664 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 FGFR2P21802 821 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 MOB2Q70IA6 237 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 CEP126Q9P2H0 1117 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 FBXO3Q9UK99 471 aa16.59■□□□□ 0.25
SDF4-203ENST00000403997 CLRN2A0PK11 232 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 SPDYE2BA6NHP3 402 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 CIAO1O76071 339 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 SPDYE6P0CI01 402 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 ZKSCAN2Q63HK3 967 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 LPIN2Q92539 896 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 DEFB129Q9H1M3 183 aa16.58■□□□□ 0.24
SDF4-203ENST00000403997 PA2G4Q9UQ80 394 aaKnown RBP16.58■□□□□ 0.24
SDF4-203ENST00000403997 KIF23Q02241 960 aaPredicted RBP16.57■□□□□ 0.24
SDF4-203ENST00000403997 TBC1D22AQ8WUA7 517 aa16.57■□□□□ 0.24
SDF4-203ENST00000403997 TSKSQ9UJT2 592 aa16.57■□□□□ 0.24
SDF4-203ENST00000403997 CA12O43570 354 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 SLC10A3P09131 477 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 IL15P40933 162 aaPredicted RBP16.56■□□□□ 0.24
SDF4-203ENST00000403997 PRKG1Q13976 671 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 ATP2B3Q16720 1220 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 ARMC9Q7Z3E5 817 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 VEZTQ9HBM0 779 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 COPRSQ9NQ92 184 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 SERPINA10Q9UK55 444 aa16.56■□□□□ 0.24
SDF4-203ENST00000403997 ZBED9Q6R2W3 1325 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 SRGAP3O43295 1099 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 GNAI2P04899 355 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 CRKP46108 304 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 GRIK5Q16478 980 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 TDRD3Q9H7E2 651 aaKnown RBP16.55■□□□□ 0.24
SDF4-203ENST00000403997 THSD7BQ9C0I4 1608 aa16.55■□□□□ 0.24
SDF4-203ENST00000403997 AOX1Q06278 1338 aa16.54■□□□□ 0.24
SDF4-203ENST00000403997 RASAL3Q86YV0 1011 aa16.54■□□□□ 0.24
SDF4-203ENST00000403997 DZIP1LQ8IYY4 767 aaKnown RBP16.54■□□□□ 0.24
SDF4-203ENST00000403997 TMEM57Q8N5G2 664 aa16.54■□□□□ 0.24
SDF4-203ENST00000403997 ZNF70Q9UC06 446 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 835.8 ms