RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 CLASRPQ8N2M8 674 aaKnown RBP23.6■■□□□ 1.37
HOXA9-202ENST00000396345 AGBL3Q8NEM8 1001 aa23.6■■□□□ 1.37
HOXA9-202ENST00000396345 DPF2Q92785 391 aa23.6■■□□□ 1.37
HOXA9-202ENST00000396345 DBNDD2Q9BQY9 259 aa23.6■■□□□ 1.37
HOXA9-202ENST00000396345 MXD3Q9BW11 206 aa23.6■■□□□ 1.37
HOXA9-202ENST00000396345 ZNF646O15015 1829 aaPredicted RBP23.6■■□□□ 1.37
HOXA9-202ENST00000396345 SCN4AP35499 1836 aa23.6■■□□□ 1.37
HOXA9-202ENST00000396345 CHAF1AQ13111 956 aaPredicted RBP23.59■■□□□ 1.37
HOXA9-202ENST00000396345 BCL11AQ9H165 835 aa23.59■■□□□ 1.37
HOXA9-202ENST00000396345 GPRC5DQ9NZD1 345 aa23.59■■□□□ 1.37
HOXA9-202ENST00000396345 MYO3BQ8WXR4 1341 aa23.59■■□□□ 1.37
HOXA9-202ENST00000396345 EPS15P42566 896 aa23.58■■□□□ 1.37
HOXA9-202ENST00000396345 GMLQ99445 158 aa23.58■■□□□ 1.37
HOXA9-202ENST00000396345 CNOT7Q9UIV1 285 aaKnown RBP23.58■■□□□ 1.37
HOXA9-202ENST00000396345 DBNLQ9UJU6 430 aaKnown RBP23.58■■□□□ 1.37
HOXA9-202ENST00000396345 MYH13Q9UKX3 1938 aa23.58■■□□□ 1.37
HOXA9-202ENST00000396345 SEMA3EO15041 775 aa23.57■■□□□ 1.36
HOXA9-202ENST00000396345 SMARCA5O60264 1052 aaPredicted RBP23.57■■□□□ 1.36
HOXA9-202ENST00000396345 FKBP1AP62942 108 aaKnown RBP23.57■■□□□ 1.36
HOXA9-202ENST00000396345 CCDC158Q5M9N0 1113 aa23.57■■□□□ 1.36
HOXA9-202ENST00000396345 TLR7Q9NYK1 1049 aaKnown RBP23.57■■□□□ 1.36
HOXA9-202ENST00000396345 DENND2AQ9ULE3 1009 aa23.57■■□□□ 1.36
HOXA9-202ENST00000396345 NEFLP07196 543 aa23.56■■□□□ 1.36
HOXA9-202ENST00000396345 IFIT2P09913 472 aaKnown RBP23.56■■□□□ 1.36
HOXA9-202ENST00000396345 EPHX2P34913 555 aa23.56■■□□□ 1.36
HOXA9-202ENST00000396345 MICALL2Q8IY33 904 aa23.56■■□□□ 1.36
HOXA9-202ENST00000396345 GCC1Q96CN9 775 aa23.56■■□□□ 1.36
HOXA9-202ENST00000396345 TAF1DQ9H5J8 278 aaPredicted RBP23.56■■□□□ 1.36
HOXA9-202ENST00000396345 SHTN1A0MZ66 631 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 H7C1D1 291 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 KIF3CO14782 793 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 ZBTB22O15209 634 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 IGHDP01880 384 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 UQCRFS1P1P0C7P4 283 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 MFSD14BQ5SR56 506 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 TTC39AQ5SRH9 613 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 CERS5Q8N5B7 392 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 TBC1D22AQ8WUA7 517 aa23.55■■□□□ 1.36
HOXA9-202ENST00000396345 USP17L8P0C7I0 530 aa23.54■■□□□ 1.36
HOXA9-202ENST00000396345 ARID4AP29374 1257 aaPredicted RBP23.54■■□□□ 1.36
HOXA9-202ENST00000396345 RASGRF1Q13972 1273 aa23.54■■□□□ 1.36
HOXA9-202ENST00000396345 C16orf71Q8IYS4 520 aaPredicted RBP23.54■■□□□ 1.36
HOXA9-202ENST00000396345 WDR66Q8TBY9 1149 aa23.54■■□□□ 1.36
HOXA9-202ENST00000396345 ADARB2Q9NS39 739 aaKnown RBP23.54■■□□□ 1.36
HOXA9-202ENST00000396345 KIAA0825Q8IV33 1275 aa23.53■■□□□ 1.36
HOXA9-202ENST00000396345 COL1A1P02452 1464 aaPredicted RBP23.53■■□□□ 1.36
HOXA9-202ENST00000396345 ZNF280AP59817 542 aaPredicted RBP23.52■■□□□ 1.36
HOXA9-202ENST00000396345 OGFOD1Q8N543 542 aa23.52■■□□□ 1.36
HOXA9-202ENST00000396345 ZBTB47Q9UFB7 747 aaPredicted RBP23.52■■□□□ 1.36
HOXA9-202ENST00000396345 PDS5AQ29RF7 1337 aaKnown RBP23.52■■□□□ 1.36
HOXA9-202ENST00000396345 EAPPQ56P03 285 aaPredicted RBP23.51■■□□□ 1.35
HOXA9-202ENST00000396345 ANKRD45Q5TZF3 282 aa23.51■■□□□ 1.35
HOXA9-202ENST00000396345 USP50Q70EL3 339 aaPredicted RBP23.51■■□□□ 1.35
HOXA9-202ENST00000396345 PNMA8AQ86V59 439 aaPredicted RBP23.51■■□□□ 1.35
HOXA9-202ENST00000396345 SPATA5Q8NB90 893 aa23.51■■□□□ 1.35
HOXA9-202ENST00000396345 ZNF512BQ96KM6 892 aaPredicted RBP23.51■■□□□ 1.35
HOXA9-202ENST00000396345 HMG20BQ9P0W2 317 aa23.51■■□□□ 1.35
HOXA9-202ENST00000396345 HDAC9Q9UKV0 1011 aa23.51■■□□□ 1.35
HOXA9-202ENST00000396345 F8W031 263 aaPredicted RBP23.5■■□□□ 1.35
HOXA9-202ENST00000396345 MCAMP43121 646 aa23.5■■□□□ 1.35
HOXA9-202ENST00000396345 MMP14P50281 582 aa23.5■■□□□ 1.35
HOXA9-202ENST00000396345 SCARF1Q14162 830 aa23.5■■□□□ 1.35
HOXA9-202ENST00000396345 SAMD7Q7Z3H4 446 aa23.5■■□□□ 1.35
HOXA9-202ENST00000396345 SMC5Q8IY18 1101 aa23.5■■□□□ 1.35
HOXA9-202ENST00000396345 TBC1D10BQ4KMP7 808 aaPredicted RBP23.49■■□□□ 1.35
HOXA9-202ENST00000396345 RBM26Q5T8P6 1007 aaKnown RBP23.49■■□□□ 1.35
HOXA9-202ENST00000396345 GRIK5Q16478 980 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 PI16Q6UXB8 463 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 ZGPATQ8N5A5 531 aaKnown RBP23.48■■□□□ 1.35
HOXA9-202ENST00000396345 TRPM4Q8TD43 1214 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 MYOZ2Q9NPC6 264 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 SNRKQ9NRH2 765 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 TTF2Q9UNY4 1162 aaKnown RBP23.48■■□□□ 1.35
HOXA9-202ENST00000396345 CLEC11AQ9Y240 323 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 SUGT1Q9Y2Z0 365 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 SALL1Q9NSC2 1324 aa23.48■■□□□ 1.35
HOXA9-202ENST00000396345 POTEIP0CG38 1075 aa23.47■■□□□ 1.35
HOXA9-202ENST00000396345 POTEJP0CG39 1038 aa23.47■■□□□ 1.35
HOXA9-202ENST00000396345 KIF4BQ2VIQ3 1234 aa23.47■■□□□ 1.35
HOXA9-202ENST00000396345 B4GALNT3Q6L9W6 998 aa23.47■■□□□ 1.35
HOXA9-202ENST00000396345 AKAP11Q9UKA4 1901 aa23.47■■□□□ 1.35
HOXA9-202ENST00000396345 TOMM70O94826 608 aa23.46■■□□□ 1.35
HOXA9-202ENST00000396345 EGFRP00533 1210 aa23.46■■□□□ 1.35
HOXA9-202ENST00000396345 HIRAP54198 1017 aaPredicted RBP23.46■■□□□ 1.35
HOXA9-202ENST00000396345 LDHDQ86WU2 507 aa23.46■■□□□ 1.35
HOXA9-202ENST00000396345 LDHBP07195 334 aaKnown RBP23.45■■□□□ 1.34
HOXA9-202ENST00000396345 SPTY2D1Q68D10 685 aaPredicted RBP23.45■■□□□ 1.34
HOXA9-202ENST00000396345 ABCF2Q9UG63 623 aa23.45■■□□□ 1.34
HOXA9-202ENST00000396345 MAST3O60307 1309 aa23.44■■□□□ 1.34
HOXA9-202ENST00000396345 ZAP70P43403 619 aa23.44■■□□□ 1.34
HOXA9-202ENST00000396345 RBM46Q8TBY0 533 aaKnown RBP23.44■■□□□ 1.34
HOXA9-202ENST00000396345 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.44■■□□□ 1.34
HOXA9-202ENST00000396345 GPATCH3Q96I76 525 aa23.44■■□□□ 1.34
HOXA9-202ENST00000396345 ADAMTSL1Q8N6G6 1762 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 ATP5JP18859 108 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 PRDX5P30044 214 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 CFAP100Q494V2 611 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 TBC1D9Q6ZT07 1266 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 ECHDC1Q9NTX5 307 aa23.43■■□□□ 1.34
HOXA9-202ENST00000396345 SERPINA10Q9UK55 444 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms