RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 ZNF827Q17R98 1081 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 SLC4A8Q2Y0W8 1093 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 JAKMIP3Q5VZ66 844 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 MICU3Q86XE3 530 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 DNAAF4Q8WXU2 420 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 CAPZA3Q96KX2 299 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 ZNF396Q96N95 335 aaPredicted RBP10.21□□□□□ -0.78
RTN4-206ENST00000394611 CTNNA3Q9UI47 895 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 SLC39A6Q13433 755 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 LRRC8AQ8IWT6 810 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 NEK1Q96PY6 1258 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 AFF2P51816 1311 aa10.21□□□□□ -0.78
RTN4-206ENST00000394611 ADKP55263 362 aaKnown RBP10.2□□□□□ -0.78
RTN4-206ENST00000394611 NOM1Q5C9Z4 860 aaKnown RBP10.2□□□□□ -0.78
RTN4-206ENST00000394611 TTC19Q6DKK2 380 aaPredicted RBP10.2□□□□□ -0.78
RTN4-206ENST00000394611 LRRN4CLQ8ND94 238 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 C8orf76Q96K31 380 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 ARFGAP3Q9NP61 516 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 USP21Q9UK80 565 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 WDR17Q8IZU2 1322 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 MICALL1Q8N3F8 863 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 POLD4Q9HCU8 107 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 BTBD11A6QL63 1104 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 TAF6LQ9Y6J9 622 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 SLIT2O94813 1529 aa10.2□□□□□ -0.78
RTN4-206ENST00000394611 CCDC171Q6TFL3 1326 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 A0A0D9SFI3 127 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 GOLGA8BA8MQT2 603 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 MNAT1P51948 309 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 ANAPC15P60006 121 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 TRDNQ13061 729 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 TLR7Q9NYK1 1049 aaKnown RBP10.19□□□□□ -0.78
RTN4-206ENST00000394611 IBTKQ9P2D0 1353 aaPredicted RBP10.19□□□□□ -0.78
RTN4-206ENST00000394611 GNAT3A8MTJ3 354 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 KCNQ3O43525 872 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 AFMP43652 599 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 CLCN6P51797 869 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 MRPS25P82663 173 aaKnown RBP10.19□□□□□ -0.78
RTN4-206ENST00000394611 ZSCAN26Q16670 478 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 STAMQ92783 540 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 ERO1AQ96HE7 468 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 USP28Q96RU2 1077 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 PLCD4Q9BRC7 762 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 BCL9LQ86UU0 1499 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 PTPDC1A2A3K4 754 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 SART3Q15020 963 aaKnown RBP10.19□□□□□ -0.78
RTN4-206ENST00000394611 FNBP4Q8N3X1 1017 aaPredicted RBP10.19□□□□□ -0.78
RTN4-206ENST00000394611 PSMB7Q99436 277 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 MYD88Q99836 296 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 RASSF4Q9H2L5 321 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 DEF6Q9H4E7 631 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 KAT6BQ8WYB5 2073 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 PTPRCP08575 1304 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 IGSF1Q8N6C5 1336 aa10.19□□□□□ -0.78
RTN4-206ENST00000394611 COL9A3Q14050 684 aaPredicted RBP10.18□□□□□ -0.78
RTN4-206ENST00000394611 HYPKQ9NX55 129 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ZMYND10O75800 440 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ATP1A3P13637 1013 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ST5P78524 1137 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ANKRD1Q15327 319 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 UBE3BQ7Z3V4 1068 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 PPFIBP1Q86W92 1011 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ORC3Q9UBD5 711 aaPredicted RBP10.18□□□□□ -0.78
RTN4-206ENST00000394611 SSBP05455 408 aaKnown RBP eCLIP10.18□□□□□ -0.78
RTN4-206ENST00000394611 TPM1P09493 284 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 GABPB1Q06547 395 aaPredicted RBP10.18□□□□□ -0.78
RTN4-206ENST00000394611 DPCR1Q3MIW9 517 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 USP44Q9H0E7 712 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 CLSTN2Q9H4D0 955 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 RGPD1P0DJD0 1748 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 ABCC6O95255 1503 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 SLC27A2O14975 620 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 PPP2R3AQ06190 1150 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 NRAPQ86VF7 1730 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 RUFY1Q96T51 708 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 MAPK8IP1Q9UQF2 711 aa10.18□□□□□ -0.78
RTN4-206ENST00000394611 TSR1Q2NL82 804 aaKnown RBP10.17□□□□□ -0.78
RTN4-206ENST00000394611 CNNM3Q8NE01 707 aa10.17□□□□□ -0.78
RTN4-206ENST00000394611 TMEM51Q9NW97 253 aa10.17□□□□□ -0.78
RTN4-206ENST00000394611 DDX41Q9UJV9 622 aaKnown RBP10.17□□□□□ -0.78
RTN4-206ENST00000394611 CUL4AQ13619 759 aa10.17□□□□□ -0.78
RTN4-206ENST00000394611 MYL10Q9BUA6 226 aa10.17□□□□□ -0.78
RTN4-206ENST00000394611 GPHNQ9NQX3 736 aaPredicted RBP10.17□□□□□ -0.78
RTN4-206ENST00000394611 MTX1Q13505 466 aa10.17□□□□□ -0.78
RTN4-206ENST00000394611 SMC1AQ14683 1233 aaKnown RBP10.17□□□□□ -0.78
RTN4-206ENST00000394611 CRB1P82279 1406 aa10.16□□□□□ -0.78
RTN4-206ENST00000394611 IDH1O75874 414 aaKnown RBP10.16□□□□□ -0.78
RTN4-206ENST00000394611 PHF23Q9BUL5 403 aaPredicted RBP10.16□□□□□ -0.78
RTN4-206ENST00000394611 NWD2Q9ULI1 1742 aa10.16□□□□□ -0.78
RTN4-206ENST00000394611 ZNF589Q86UQ0 364 aaPredicted RBP10.16□□□□□ -0.78
RTN4-206ENST00000394611 MRPS27Q92552 414 aaKnown RBP10.16□□□□□ -0.78
RTN4-206ENST00000394611 CARD10Q9BWT7 1032 aa10.16□□□□□ -0.78
RTN4-206ENST00000394611 CLSTN1O94985 981 aa10.16□□□□□ -0.78
RTN4-206ENST00000394611 KLF18A0A0U1RQI7 1052 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 EPB41L2O43491 1005 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 IPO7O95373 1038 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 RAD51AP2Q09MP3 1159 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 ZNF569Q5MCW4 686 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 RNF187Q5TA31 235 aaPredicted RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 CPLX2Q6PUV4 134 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms