RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ERCC6LQ2NKX8 1250 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 RPL13P26373 211 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 TSHZ3Q63HK5 1081 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 SPTLC2O15270 562 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 CPLX4Q7Z7G2 160 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 ARHGAP45Q92619 1136 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 ZFP91Q96JP5 570 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 PAG1Q9NWQ8 432 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 SEPT6Q14141 434 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 C16orf71Q8IYS4 520 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 PPFIA3O75145 1194 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 HDAC1Q13547 482 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 NOLC1Q14978 699 aaKnown RBP eCLIP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 DTHD1Q6ZMT9 781 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 GPR161Q8N6U8 529 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 CIB2O75838 187 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 ARFGAP2Q8N6H7 521 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 CHPF2Q9P2E5 772 aa14.42□□□□□ -0.1
CCDC88C-204ENST00000389857 TUBBP07437 444 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 VAV2P52735 878 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 TERF1P54274 439 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 KCNK9Q9NPC2 374 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 CALCOCO2Q13137 446 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 HSP90AA4PQ58FG1 418 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 ESYT1Q9BSJ8 1104 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 GRM8O00222 908 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 SDSP20132 328 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 SLC9C2Q5TAH2 1124 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 F13A1P00488 732 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 PPP1R2P41236 205 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 ZCRB1Q8TBF4 217 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 CAPZA3Q96KX2 299 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC26Q8TAB7 109 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 ALDH1L1O75891 902 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 SLC8A3P57103 927 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 WDR44Q5JSH3 913 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 NBPF11Q86T75 865 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC65Q8IXS2 484 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 GABPB2Q8TAK5 448 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 AGTPBP1Q9UPW5 1226 aa14.41□□□□□ -0.1
CCDC88C-204ENST00000389857 EPB41P11171 864 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 MCM7P33993 719 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 BRAPQ7Z569 592 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 LRRC2Q9BYS8 371 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 EBAG9O00559 213 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 FAM184BQ9ULE4 1060 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC25Q86WR0 208 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 INF2Q27J81 1249 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 MSH6P52701 1360 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 IFT81Q8WYA0 676 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 DNAJC25Q9H1X3 360 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 VEZTQ9HBM0 779 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 GUCA1BQ9UMX6 200 aa14.4□□□□□ -0.1
CCDC88C-204ENST00000389857 RPUSD2Q8IZ73 545 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 CAPN2P17655 700 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 TNNI2P48788 182 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 TTC41PQ6P2S7 1318 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 CCDC186Q7Z3E2 898 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 CADPS2Q86UW7 1296 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 MICALL1Q8N3F8 863 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 SWAP70Q9UH65 585 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 SMIM23A6NLE4 172 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 VPS52Q8N1B4 723 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 ANKRD2Q9GZV1 360 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 DACT1Q9NYF0 836 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 XAGE3Q8WTP9 111 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 JARID2Q92833 1246 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 STMN2Q93045 179 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 SH2D4AQ9H788 454 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 E7EVH7 732 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 KRT5P13647 590 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 VWA3BQ502W6 1294 aa14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 NIP7Q9Y221 180 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88C-204ENST00000389857 STX10O60499 249 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 LACTBP83111 547 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 AFAP1L2Q8N4X5 818 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 UBLCP1Q8WVY7 318 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 NKIRAS1Q9NYS0 192 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 NOS1P29475 1434 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 CNGA4Q8IV77 575 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 KIFC2Q96AC6 838 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 ZNF569Q5MCW4 686 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 RNF113AO15541 343 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 STK10O94804 968 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 GEN1Q17RS7 908 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 INTS8Q75QN2 995 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 MAGEB6Q8N7X4 407 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 VPS18Q9P253 973 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 ZBTB21Q9ULJ3 1066 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 STK24Q9Y6E0 443 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 DCAF17Q5H9S7 520 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 MCM9Q9NXL9 1143 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 PDE1AP54750 535 aa14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 LUC7L2Q9Y383 392 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-204ENST00000389857 TYRO3Q06418 890 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 FYB2Q5VWT5 728 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 SV2BQ7L1I2 683 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 FNBP1Q96RU3 617 aa14.37□□□□□ -0.11
CCDC88C-204ENST00000389857 EYA3Q99504 573 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms