RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 PLIN1O60240 522 aa18.3■□□□□ 0.52
PRPF40A-201ENST00000354363 DLGAP5Q15398 846 aa18.3■□□□□ 0.52
PRPF40A-201ENST00000354363 SUCLG2Q96I99 432 aa18.3■□□□□ 0.52
PRPF40A-201ENST00000354363 COL1A1P02452 1464 aaPredicted RBP18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 ARAP2Q8WZ64 1704 aa18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 RGS19P49795 217 aa18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 MTMR14Q8NCE2 650 aa18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 KAZALD1Q96I82 304 aa18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 PCDHAC2Q9Y5I4 1007 aa18.29■□□□□ 0.52
PRPF40A-201ENST00000354363 F8W031 263 aaPredicted RBP18.28■□□□□ 0.52
PRPF40A-201ENST00000354363 FKBP1AP62942 108 aaKnown RBP18.28■□□□□ 0.52
PRPF40A-201ENST00000354363 ARMC9Q7Z3E5 817 aa18.28■□□□□ 0.52
PRPF40A-201ENST00000354363 NBPF7P0C2Y1 421 aaPredicted RBP18.27■□□□□ 0.52
PRPF40A-201ENST00000354363 PTPN12Q05209 780 aaKnown RBP18.27■□□□□ 0.52
PRPF40A-201ENST00000354363 PRKG1Q13976 671 aa18.27■□□□□ 0.52
PRPF40A-201ENST00000354363 JAG2Q9Y219 1238 aa18.27■□□□□ 0.52
PRPF40A-201ENST00000354363 UTYO14607 1347 aa18.27■□□□□ 0.52
PRPF40A-201ENST00000354363 CFAP100Q494V2 611 aa18.27■□□□□ 0.51
PRPF40A-201ENST00000354363 MRPL50Q8N5N7 158 aaKnown RBP18.27■□□□□ 0.51
PRPF40A-201ENST00000354363 PUS3Q9BZE2 481 aaKnown RBP18.27■□□□□ 0.51
PRPF40A-201ENST00000354363 DEFB129Q9H1M3 183 aa18.27■□□□□ 0.51
PRPF40A-201ENST00000354363 MKRN3Q13064 507 aaKnown RBP18.26■□□□□ 0.51
PRPF40A-201ENST00000354363 UBE4AQ14139 1066 aa18.26■□□□□ 0.51
PRPF40A-201ENST00000354363 LAMB1P07942 1786 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 SPDYE2BA6NHP3 402 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 SPDYE6P0CI01 402 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 TM4SF4P48230 202 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 MLLT1Q03111 559 aaPredicted RBP18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 LDLRAD1Q5T700 205 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 TDRD7Q8NHU6 1098 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 PRMT6Q96LA8 375 aaPredicted RBP18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 ANGEL1Q9UNK9 670 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 FAM205AQ6ZU69 1335 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 SSC5DA1L4H1 1573 aa18.25■□□□□ 0.51
PRPF40A-201ENST00000354363 GYG1P46976 350 aa18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 BICC1Q9H694 974 aaKnown RBP18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 FZD1Q9UP38 647 aa18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 RIPOR2Q9Y4F9 1068 aa18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 PPP2R3BQ9Y5P8 575 aa18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 AOX1Q06278 1338 aa18.24■□□□□ 0.51
PRPF40A-201ENST00000354363 CLRN2A0PK11 232 aa18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 MYO1BO43795 1136 aa18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 RABL6Q3YEC7 729 aaPredicted RBP18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 CTU1Q7Z7A3 348 aaKnown RBP18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 FAM84BQ96KN1 310 aaPredicted RBP18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 TBC1D8O95759 1140 aa18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 HIBADHP31937 336 aaKnown RBP18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 MAP3K11Q16584 847 aa18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 PTPRCP08575 1304 aa18.23■□□□□ 0.51
PRPF40A-201ENST00000354363 OTOFQ9HC10 1997 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 E9PSI1 815 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 RBM5P52756 815 aaKnown RBP eCLIP18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 SREBF2Q12772 1141 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 MFSD14BQ5SR56 506 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 SPRYD7Q5W111 196 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 ANKRD44Q8N8A2 993 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 VEZTQ9HBM0 779 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 MROH5Q6ZUA9 1318 aa18.22■□□□□ 0.51
PRPF40A-201ENST00000354363 SSH1Q8WYL5 1049 aa18.21■□□□□ 0.51
PRPF40A-201ENST00000354363 MYH13Q9UKX3 1938 aa18.21■□□□□ 0.51
PRPF40A-201ENST00000354363 LRRC24Q50LG9 513 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 ZNF296Q8WUU4 475 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 PPP1R12BO60237 982 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 SLFN5Q08AF3 891 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 SUPT20HL1Q3ZLR7 823 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 NBPF12Q5TAG4 269 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 FBXO33Q7Z6M2 555 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 SLC10A4Q96EP9 437 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 CLMNQ96JQ2 1002 aa18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 TTF2Q9UNY4 1162 aaKnown RBP18.2■□□□□ 0.5
PRPF40A-201ENST00000354363 GPR25O00155 361 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 RASA3Q14644 834 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 SPDYE2Q495Y8 402 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 NOM1Q5C9Z4 860 aaKnown RBP18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 METTL24Q5JXM2 366 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 USP44Q9H0E7 712 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 SERPINA10Q9UK55 444 aa18.19■□□□□ 0.5
PRPF40A-201ENST00000354363 VGLL2Q8N8G2 317 aa18.18■□□□□ 0.5
PRPF40A-201ENST00000354363 CFHR5Q9BXR6 569 aa18.18■□□□□ 0.5
PRPF40A-201ENST00000354363 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.18■□□□□ 0.5
PRPF40A-201ENST00000354363 ZNF70Q9UC06 446 aaPredicted RBP18.18■□□□□ 0.5
PRPF40A-201ENST00000354363 UNCXA6NJT0 531 aa18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 USP2O75604 605 aaPredicted RBP18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 KLHDC4Q8TBB5 520 aa18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 WNK4Q96J92 1243 aa18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 R3HDMLQ9H3Y0 253 aa18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 TDRD3Q9H7E2 651 aaKnown RBP18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 IQSEC3Q9UPP2 1182 aaPredicted RBP18.17■□□□□ 0.5
PRPF40A-201ENST00000354363 MANSC4A6NHS7 340 aaPredicted RBP18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 PDE8BO95263 885 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 ZBTB48P10074 688 aaPredicted RBP18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 IREB2P48200 963 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 TNFAIP1Q13829 316 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 GRIK5Q16478 980 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 VPS37DQ86XT2 251 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 DZIP1LQ8IYY4 767 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 CRKP46108 304 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 SOX10P56693 466 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 PKN2Q16513 984 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 ALDH1L2Q3SY69 923 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms