RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 USP48Q86UV5 1035 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 CKAP2LQ8IYA6 745 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 TCP11L1Q9NUJ3 509 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 ANAPC15P60006 121 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 TNNI3KQ59H18 835 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 PPFIBP1Q86W92 1011 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 PYM1Q9BRP8 204 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 FPGT-TNNI3KV9GXZ4 949 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 RIMS1Q86UR5 1692 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 RTL9Q8NET4 1388 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 ZBTB7BO15156 539 aaPredicted RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 CCP110O43303 1012 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 PCCAP05165 728 aaPredicted RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 SETD1BQ9UPS6 1966 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 HELLSQ9NRZ9 838 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 ABT1Q9ULW3 272 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 UNC13BO14795 1591 aa18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 CLTCQ00610 1675 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-201ENST00000344626 RTN1Q16799 776 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 LRRC2Q9BYS8 371 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 SMTNL1A8MU46 457 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 BBOX1O75936 387 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 ATG3Q9NT62 314 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 RNF17Q9BXT8 1623 aaKnown RBP18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 RLBP1P12271 317 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 CALML4Q96GE6 196 aa18.93■□□□□ 0.62
SMARCA4-201ENST00000344626 TCEANC2Q96MN5 208 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 USP40Q9NVE5 1235 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 CDC42BPGQ6DT37 1551 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 ZMYM4Q5VZL5 1548 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 TSG101Q99816 390 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 TCP10L2B9ZVM9 353 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 MAPKAPK5Q8IW41 473 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 BRF1Q92994 677 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 TAOK3Q9H2K8 898 aa18.92■□□□□ 0.62
SMARCA4-201ENST00000344626 CRB1P82279 1406 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 AMPD3Q01432 767 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 GREM2Q9H772 168 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 ARHGEF40Q8TER5 1519 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 DESP17661 470 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 IRX3P78415 501 aaPredicted RBP18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 GPS2Q13227 327 aa18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 ARHGEF1Q92888 912 aaKnown RBP18.91■□□□□ 0.62
SMARCA4-201ENST00000344626 SMARCC2Q8TAQ2 1214 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 RNF181Q9P0P0 153 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 OVOS2A0A0G2JMS6 1433 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 OVOS2A0A0J9YW53 1432 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 OVOS2Q6IE36 1432 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 CCDC171Q6TFL3 1326 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 KDRP35968 1356 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.9■□□□□ 0.621e-6■■■■■ 115.7
SMARCA4-201ENST00000344626 LRRC27Q9C0I9 530 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 AGLP35573 1532 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 ALKQ9UM73 1620 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 BMP15O95972 392 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 GJB2P29033 226 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 ARMT1Q9H993 441 aa18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 BLMP54132 1417 aaPredicted RBP18.9■□□□□ 0.62
SMARCA4-201ENST00000344626 CLTCL1P53675 1640 aa18.89■□□□□ 0.62
SMARCA4-201ENST00000344626 NPR1P16066 1061 aa18.89■□□□□ 0.62
SMARCA4-201ENST00000344626 CHRNDQ07001 517 aa18.89■□□□□ 0.62
SMARCA4-201ENST00000344626 ARHGEF10LQ9HCE6 1279 aa18.89■□□□□ 0.62
SMARCA4-201ENST00000344626 HEG1Q9ULI3 1381 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 FGFR1OPO95684 399 aaKnown RBP18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 UBA5Q9GZZ9 404 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 PRDM1O75626 825 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 HEATR3Q7Z4Q2 680 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 ERMNQ8TAM6 284 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 DEF6Q9H4E7 631 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 SPATA31A1Q5TZJ5 1347 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 SMIM5Q71RC9 77 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 ZNF804BA4D1E1 1349 aa18.89■□□□□ 0.61
SMARCA4-201ENST00000344626 CDC42BPBQ9Y5S2 1711 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 PRC1O43663 620 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 STXBP4Q6ZWJ1 553 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 SEC31BQ9NQW1 1179 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 CLRN2A0PK11 232 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 SMC5Q8IY18 1101 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 CPXCR1Q8N123 301 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 LMTK2Q8IWU2 1503 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 MAP3K11Q16584 847 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 TGFBRAP1Q8WUH2 860 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 RRP36Q96EU6 259 aaKnown RBP18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 MASTLQ96GX5 879 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 XDHP47989 1333 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 EZH2Q15910 746 aaKnown RBP18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 SPATA5Q8NB90 893 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 NARFQ9UHQ1 456 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 GLI2P10070 1586 aa18.88■□□□□ 0.61
SMARCA4-201ENST00000344626 RBM25P49756 843 aaKnown RBP18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 CC2D2BQ6DHV5 1058 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 NDUFB9Q9Y6M9 179 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 BCAMP50895 628 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 SP4Q02446 784 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 VSIG10Q8N0Z9 540 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 MARCH10Q8NA82 808 aaPredicted RBP18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 SSFA2P28290 1259 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 AOX1Q06278 1338 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 CA8P35219 290 aa18.87■□□□□ 0.61
SMARCA4-201ENST00000344626 RTKN2Q8IZC4 609 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms