RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PIH1D3Q9NQM4 214 aaKnown RBP22.76■■□□□ 1.23
COL9A3-201ENST00000343916 ANKRD36CQ5JPF3 1778 aa22.76■■□□□ 1.23
COL9A3-201ENST00000343916 COL22A1Q8NFW1 1626 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-201ENST00000343916 AP5Z1O43299 807 aa22.76■■□□□ 1.23
COL9A3-201ENST00000343916 ZNF830Q96NB3 372 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-201ENST00000343916 DENND2AQ9ULE3 1009 aa22.76■■□□□ 1.23
COL9A3-201ENST00000343916 ERVV-1B6SEH8 477 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 ADD1P35611 737 aaKnown RBP22.75■■□□□ 1.23
COL9A3-201ENST00000343916 CCDC102BQ68D86 513 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 ZNF34Q8IZ26 560 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.75■■□□□ 1.23
COL9A3-201ENST00000343916 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.75■■□□□ 1.23
COL9A3-201ENST00000343916 SLIT2O94813 1529 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-201ENST00000343916 PRC1O43663 620 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 ADD2P35612 726 aa22.75■■□□□ 1.23
COL9A3-201ENST00000343916 NAA16Q6N069 864 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-201ENST00000343916 FDPSP14324 419 aaKnown RBP22.74■■□□□ 1.23
COL9A3-201ENST00000343916 PIP4K2BP78356 416 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 MB21D2Q8IYB1 491 aaPredicted RBP22.74■■□□□ 1.23
COL9A3-201ENST00000343916 ABCC12Q96J65 1359 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 ZNF213O14771 459 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 ANTXR2P58335 489 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 TYRO3Q06418 890 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 SUSD4Q5VX71 490 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 CFAP45Q9UL16 551 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 MRVI1Q9Y6F6 885 aa22.74■■□□□ 1.23
COL9A3-201ENST00000343916 MYO5AQ9Y4I1 1855 aaKnown RBP22.74■■□□□ 1.23
COL9A3-201ENST00000343916 MYH7P12883 1935 aa22.73■■□□□ 1.23
COL9A3-201ENST00000343916 CARMIL3Q8ND23 1372 aa22.73■■□□□ 1.23
COL9A3-201ENST00000343916 MCM5P33992 734 aa22.73■■□□□ 1.23
COL9A3-201ENST00000343916 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.73■■□□□ 1.23
COL9A3-201ENST00000343916 NKX2-3Q8TAU0 364 aa22.73■■□□□ 1.23
COL9A3-201ENST00000343916 DOT1LQ8TEK3 1739 aa22.73■■□□□ 1.23
COL9A3-201ENST00000343916 OTUD7BQ6GQQ9 843 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 INTS5Q6P9B9 1019 aaKnown RBP22.72■■□□□ 1.23
COL9A3-201ENST00000343916 NCOA7Q8NI08 942 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 USP28Q96RU2 1077 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 NBPF3Q9H094 633 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 DDX19AQ9NUU7 478 aaKnown RBP22.72■■□□□ 1.23
COL9A3-201ENST00000343916 WWC3Q9ULE0 1092 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 KIF3AQ9Y496 699 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 ZNF532Q9HCE3 1301 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 KLF18A0A0U1RQI7 1052 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 ATP6V1AP38606 617 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 EIF5P55010 431 aaKnown RBP22.72■■□□□ 1.23
COL9A3-201ENST00000343916 EVCP57679 992 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 RALYLQ86SE5 291 aaKnown RBP22.72■■□□□ 1.23
COL9A3-201ENST00000343916 SEC31BQ9NQW1 1179 aa22.72■■□□□ 1.23
COL9A3-201ENST00000343916 APPP05067 770 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 CRKLP46109 303 aaKnown RBP22.71■■□□□ 1.23
COL9A3-201ENST00000343916 DDB1Q16531 1140 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 ILDR1Q86SU0 546 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-201ENST00000343916 FBXL16Q8N461 479 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 CLSTN2Q9H4D0 955 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 PHLPP1O60346 1717 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 PLCH1Q4KWH8 1693 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 GOLGA8BA8MQT2 603 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 LUZP1Q86V48 1076 aa22.71■■□□□ 1.23
COL9A3-201ENST00000343916 ZNF512BQ96KM6 892 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-201ENST00000343916 R3HCC1Q9Y3T6 440 aaKnown RBP22.71■■□□□ 1.23
COL9A3-201ENST00000343916 TTF1Q15361 905 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-201ENST00000343916 PUM3Q15397 648 aaKnown RBP22.7■■□□□ 1.22
COL9A3-201ENST00000343916 FAM200AQ8TCP9 573 aa22.7■■□□□ 1.22
COL9A3-201ENST00000343916 TTC12Q9H892 705 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-201ENST00000343916 HPS5Q9UPZ3 1129 aa22.7■■□□□ 1.22
COL9A3-201ENST00000343916 ANO6Q4KMQ2 910 aa22.7■■□□□ 1.22
COL9A3-201ENST00000343916 ZSCAN25Q6NSZ9 544 aa22.7■■□□□ 1.22
COL9A3-201ENST00000343916 KLHL34Q8N239 644 aa22.7■■□□□ 1.22
COL9A3-201ENST00000343916 TOM1O60784 492 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 PDE6AP16499 860 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 ARID4AP29374 1257 aaPredicted RBP22.69■■□□□ 1.22
COL9A3-201ENST00000343916 TBC1D10CQ8IV04 446 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 LPIN2Q92539 896 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 GJB4Q9NTQ9 266 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 CCDC87Q9NVE4 849 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 FGFR2P21802 821 aa22.69■■□□□ 1.22
COL9A3-201ENST00000343916 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-201ENST00000343916 RBM43Q6ZSC3 357 aaKnown RBP22.68■■□□□ 1.22
COL9A3-201ENST00000343916 RCOR1Q9UKL0 485 aa22.68■■□□□ 1.22
COL9A3-201ENST00000343916 SPATA31A1Q5TZJ5 1347 aa22.68■■□□□ 1.22
COL9A3-201ENST00000343916 ITPK1Q13572 414 aa22.68■■□□□ 1.22
COL9A3-201ENST00000343916 UBE3CQ15386 1083 aa22.68■■□□□ 1.22
COL9A3-201ENST00000343916 MROH5Q6ZUA9 1318 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 LOC102724428A0A0B4J2F2 783 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 SIK1P57059 783 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 MARCH10Q8NA82 808 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-201ENST00000343916 MPHOSPH8Q99549 860 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 GOLPH3LQ9H4A5 285 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 MYH15Q9Y2K3 1946 aa22.67■■□□□ 1.22
COL9A3-201ENST00000343916 TCRBV5S4A2TA0A5A2 114 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 RBM10P98175 930 aaKnown RBP22.66■■□□□ 1.22
COL9A3-201ENST00000343916 RASGRF1Q13972 1273 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 CYB5R4Q7L1T6 521 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 CCAR1Q8IX12 1150 aaKnown RBP22.66■■□□□ 1.22
COL9A3-201ENST00000343916 UTP14AQ9BVJ6 771 aaKnown RBP22.66■■□□□ 1.22
COL9A3-201ENST00000343916 CBX8Q9HC52 389 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 UQCRFS1P1P0C7P4 283 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 TRDNQ13061 729 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 SPATA5Q8NB90 893 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms