RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZSCAN1Q8NBB4 408 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 TMEM87AQ8NBN3 555 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 BACH2Q9BYV9 841 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 CLEC4MQ9H2X3 399 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 ZNF576Q9H609 170 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 RRAGCQ9HB90 399 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 SRA1Q9HD15 236 aaKnown RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 METTL5Q9NRN9 209 aaKnown RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 USP31Q70CQ4 1352 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 H3BRJ5 948 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 SCAMP3O14828 347 aaKnown RBP5.58□□□□□ -1.52
HMGB1-201ENST00000326004 NID1P14543 1247 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 HOXB4P17483 251 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-201ENST00000326004 FAM117BQ6P1L5 589 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 C8orf86Q6ZUL3 223 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 VN1R5Q7Z5H4 357 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 WNT8BQ93098 351 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 CEP44Q9C0F1 390 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 TTF2Q9UNY4 1162 aaKnown RBP5.58□□□□□ -1.52
HMGB1-201ENST00000326004 AKAP2Q9Y2D5 859 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 PPME1Q9Y570 386 aa5.58□□□□□ -1.52
HMGB1-201ENST00000326004 EPHA1P21709 976 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 LORP23490 312 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-201ENST00000326004 BAG6P46379 1132 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 PCDH1Q08174 1060 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 COL9A3Q14050 684 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-201ENST00000326004 ADAMTSL4Q6UY14 1074 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 SV2BQ7L1I2 683 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 MAP4K3Q8IVH8 894 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 DTWD1Q8N5C7 304 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 DCAF11Q8TEB1 546 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 SOX17Q9H6I2 414 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-201ENST00000326004 SH2B1Q9NRF2 756 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-201ENST00000326004 MKL2Q9ULH7 1088 aa5.57□□□□□ -1.52
HMGB1-201ENST00000326004 SPDYE3A6NKU9 549 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 GNB5O14775 395 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 ESRRAP11474 423 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-201ENST00000326004 TCF3P15923 654 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 ARL4DP49703 201 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 PIP4K2BP78356 416 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 PPP2R3AQ06190 1150 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 IKBKEQ14164 716 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 LDLRAD1Q5T700 205 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 MEI1Q5TIA1 1274 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 ILDR2Q71H61 639 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 PODNQ7Z5L7 613 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 DDX54Q8TDD1 881 aaKnown RBP5.56□□□□□ -1.52
HMGB1-201ENST00000326004 NOC4LQ9BVI4 516 aaKnown RBP5.56□□□□□ -1.52
HMGB1-201ENST00000326004 OSGEPQ9NPF4 335 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 SEC31BQ9NQW1 1179 aa5.56□□□□□ -1.52
HMGB1-201ENST00000326004 GPN3Q9UHW5 284 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-201ENST00000326004 B3GALT4O96024 378 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 RLBP1P12271 317 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 ZNF76P36508 570 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 FAAP100Q0VG06 881 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 TPTE2Q6XPS3 522 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 LINC00114Q6XXX2 140 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 NECAB3Q96P71 396 aaPredicted RBP5.55□□□□□ -1.52
HMGB1-201ENST00000326004 IGSF5Q9NSI5 407 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 TMEM39AQ9NV64 488 aa5.55□□□□□ -1.52
HMGB1-201ENST00000326004 NOP53Q9NZM5 478 aaKnown RBP5.55□□□□□ -1.52
HMGB1-201ENST00000326004 LINC01387J3KSC0 135 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 SOX1O00570 391 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-201ENST00000326004 FSCN2O14926 492 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 RAC1P63000 192 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 SNRPNP63162 240 aaKnown RBP5.54□□□□□ -1.52
HMGB1-201ENST00000326004 FANCCQ00597 558 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 C19orf57Q0VDD7 668 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 ZNF423Q2M1K9 1284 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 TRAPPC3LQ5T215 181 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 HS2ST1Q7LGA3 356 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 DMRTC2Q8IXT2 367 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-201ENST00000326004 BEND7Q8N7W2 519 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-201ENST00000326004 KLHL23Q8NBE8 558 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 RNF34Q969K3 372 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 SAMM50Q9Y512 469 aa5.54□□□□□ -1.52
HMGB1-201ENST00000326004 FAM181BA6NEQ2 426 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 ENC1O14682 589 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 RANGAP1P46060 587 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-201ENST00000326004 AP3B2Q13367 1082 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 PWP1Q13610 501 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 SETDB1Q15047 1291 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 CCDC85BQ15834 202 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-201ENST00000326004 TRIM11Q96F44 468 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 SCARF2Q96GP6 870 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-201ENST00000326004 ADAMTS8Q9UP79 889 aa5.53□□□□□ -1.52
HMGB1-201ENST00000326004 A0A0A0MRY4 1105 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 FBXO24O75426 580 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 NME2P22392 152 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 CDC25BP30305 580 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 SUZ12Q15022 739 aaKnown RBP5.52□□□□□ -1.53
HMGB1-201ENST00000326004 TXNDC11Q6PKC3 985 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 FBXO11Q86XK2 927 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 FMR1NBQ8N0W7 255 aaPredicted RBP5.52□□□□□ -1.53
HMGB1-201ENST00000326004 SLC7A3Q8WY07 619 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 RSRP1Q9BUV0 290 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 PLVAPQ9BX97 442 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 EMILIN2Q9BXX0 1053 aa5.52□□□□□ -1.53
HMGB1-201ENST00000326004 CYP11A1P05108 521 aa5.51□□□□□ -1.53
HMGB1-201ENST00000326004 CELA3AP09093 270 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms