RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 UBAP1LF5GYI3 381 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 DNAJC10Q8IXB1 793 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 SNW1Q13573 536 aaKnown RBP19.17■□□□□ 0.66
PHRF1-201ENST00000264555 TMEM87BQ96K49 555 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 PAXBP1Q9Y5B6 917 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 GLI2P10070 1586 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 ERBB4Q15303 1308 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 FAM114A1Q8IWE2 563 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 DENND2AQ9ULE3 1009 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 A2ML1A8K2U0 1454 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 LRRC27Q9C0I9 530 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 GBP3Q9H0R5 595 aa19.17■□□□□ 0.66
PHRF1-201ENST00000264555 MTIF2P46199 727 aaKnown RBP19.16■□□□□ 0.66
PHRF1-201ENST00000264555 LEKR1Q6ZMV7 388 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 LRRIQ1Q96JM4 1722 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 PRKCSHP14314 528 aaPredicted RBP19.16■□□□□ 0.66
PHRF1-201ENST00000264555 ZNF445P59923 1031 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 TAF4BQ92750 862 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 GPAA1O43292 621 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 PPP4R3BQ5MIZ7 849 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 EAF2Q96CJ1 260 aaPredicted RBP19.16■□□□□ 0.66
PHRF1-201ENST00000264555 CALML3P27482 149 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 TCIRG1Q13488 830 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 LMBRD1Q9NUN5 540 aa19.16■□□□□ 0.66
PHRF1-201ENST00000264555 EHMT1Q9H9B1 1298 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 BRD1O95696 1058 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 SKILP12757 684 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 AFMP43652 599 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 CEP135Q66GS9 1140 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 LPIN2Q92539 896 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 CTAGE1Q96RT6 745 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 SEPT11Q9NVA2 429 aaKnown RBP19.15■□□□□ 0.66
PHRF1-201ENST00000264555 CGNQ9P2M7 1197 aaKnown RBP19.15■□□□□ 0.66
PHRF1-201ENST00000264555 CABP5Q9NP86 173 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 MCM9Q9NXL9 1143 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 ADGRB3O60242 1522 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 IDEP14735 1019 aa19.15■□□□□ 0.66
PHRF1-201ENST00000264555 DYNC1I1O14576 645 aa19.14■□□□□ 0.66
PHRF1-201ENST00000264555 DSCC1Q9BVC3 393 aa19.14■□□□□ 0.66
PHRF1-201ENST00000264555 RBSNQ9H1K0 784 aa19.14■□□□□ 0.66
PHRF1-201ENST00000264555 GOLGA6L10A6NI86 522 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 KRT2P35908 639 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 ZNF219Q9P2Y4 722 aaPredicted RBP19.14■□□□□ 0.65
PHRF1-201ENST00000264555 PLCG2P16885 1265 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 HEATR3Q7Z4Q2 680 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 N4BP3O15049 544 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 RXRAP19793 462 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 FAM160A1Q05DH4 1040 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 ZNF622Q969S3 477 aaKnown RBP eCLIP19.14■□□□□ 0.653e-7■■■■□ 25.2
PHRF1-201ENST00000264555 RRAGBQ5VZM2 374 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 ANGEL1Q9UNK9 670 aaKnown RBP19.14■□□□□ 0.65
PHRF1-201ENST00000264555 NDUFB9Q9Y6M9 179 aa19.14■□□□□ 0.65
PHRF1-201ENST00000264555 E9PCH4 1651 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 CPSF1Q10570 1443 aaKnown RBP19.13■□□□□ 0.65
PHRF1-201ENST00000264555 USO1O60763 962 aaKnown RBP19.13■□□□□ 0.65
PHRF1-201ENST00000264555 STAT6P42226 847 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 CCDC87Q9NVE4 849 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 RBM28Q9NW13 759 aaKnown RBP19.13■□□□□ 0.65
PHRF1-201ENST00000264555 TSPOAP1O95153 1857 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 SETBP1Q9Y6X0 1596 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 TTC12Q9H892 705 aaPredicted RBP19.13■□□□□ 0.65
PHRF1-201ENST00000264555 PTCH1Q13635 1447 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 B4E1Z4 1266 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 SPAG1Q07617 926 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 NPHP4O75161 1426 aaPredicted RBP19.13■□□□□ 0.65
PHRF1-201ENST00000264555 ABCA9Q8IUA7 1624 aa19.13■□□□□ 0.65
PHRF1-201ENST00000264555 LMTK2Q8IWU2 1503 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 LMTK3Q96Q04 1460 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 MROH5Q6ZUA9 1318 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 LDHBP07195 334 aaKnown RBP19.12■□□□□ 0.65
PHRF1-201ENST00000264555 WWC2Q6AWC2 1192 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 VPS36Q86VN1 386 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 UBA5Q9GZZ9 404 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 EXOC1Q9NV70 894 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 PALD1Q9ULE6 856 aa19.12■□□□□ 0.65
PHRF1-201ENST00000264555 TRIM47Q96LD4 638 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 ALKQ9UM73 1620 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 NSFL1CQ9UNZ2 370 aaKnown RBP19.11■□□□□ 0.65
PHRF1-201ENST00000264555 ABCA6Q8N139 1617 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 SIRT2Q8IXJ6 389 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 KRI1Q8N9T8 703 aaKnown RBP19.11■□□□□ 0.65
PHRF1-201ENST00000264555 ARMT1Q9H993 441 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 NCOA5Q9HCD5 579 aaKnown RBP19.11■□□□□ 0.65
PHRF1-201ENST00000264555 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.11■□□□□ 0.651e-7■■■■□ 21.8
PHRF1-201ENST00000264555 ZAP70P43403 619 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 NAPAP54920 295 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 DHX58Q96C10 678 aa19.11■□□□□ 0.65
PHRF1-201ENST00000264555 LAMC1P11047 1609 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 PTH1RQ03431 593 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 C6orf50Q9HD87 102 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 COPRSQ9NQ92 184 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 GNPATO15228 680 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 ANKARQ7Z5J8 1434 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 PROSER3Q2NL68 480 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 LUZP1Q86V48 1076 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 ZKSCAN3Q9BRR0 538 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 TMEM94Q12767 1356 aa19.1■□□□□ 0.65
PHRF1-201ENST00000264555 A0A0D9SFI3 127 aa19.09■□□□□ 0.65
PHRF1-201ENST00000264555 CCDC40Q4G0X9 1142 aa19.09■□□□□ 0.65
PHRF1-201ENST00000264555 EDC3Q96F86 508 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms