RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ARHGEF10O15013 1369 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 PSDA5PKW4 1024 aaPredicted RBP16.61■□□□□ 0.25
SDC1-201ENST00000254351 CCDC12Q8WUD4 166 aaPredicted RBP16.61■□□□□ 0.25
SDC1-201ENST00000254351 DHX58Q96C10 678 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 KAZALD1Q96I82 304 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 RXRAP19793 462 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 FANCLQ9NW38 375 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 RHOXF2BP0C7M4 288 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 TFCP2Q12800 502 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 MTF1Q14872 753 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 LRRFIP1Q32MZ4 808 aaKnown RBP16.6■□□□□ 0.25
SDC1-201ENST00000254351 EPHA10Q5JZY3 1008 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 RHOXF2Q9BQY4 288 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 DBNDD2Q9BQY9 259 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 RABEP2Q9H5N1 569 aa16.6■□□□□ 0.25
SDC1-201ENST00000254351 LRRC59Q96AG4 307 aaKnown RBP16.59■□□□□ 0.25
SDC1-201ENST00000254351 RBM33Q96EV2 1170 aaKnown RBP16.59■□□□□ 0.25
SDC1-201ENST00000254351 IMPACTQ9P2X3 320 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 DBNLQ9UJU6 430 aaKnown RBP16.59■□□□□ 0.25
SDC1-201ENST00000254351 PPP2R2CQ9Y2T4 447 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 NALCNQ8IZF0 1738 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 TOPAZ1Q8N9V7 1692 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 GOLIM4O00461 696 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 RIC3Q7Z5B4 369 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 CREBRFQ8IUR6 639 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 REXO1L1PQ8IX06 675 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 AIFM3Q96NN9 605 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 FLT4P35916 1363 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 VWA3AA6NCI4 1184 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 EFCAB8A8MWE9 144 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 GRM8O00222 908 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 NCAPHQ15003 741 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 SYNE3Q6ZMZ3 975 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 TRMT44Q8IYL2 757 aaKnown RBP16.59■□□□□ 0.25
SDC1-201ENST00000254351 CLIC6Q96NY7 704 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 HINFPQ9BQA5 517 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 HMG20BQ9P0W2 317 aa16.59■□□□□ 0.25
SDC1-201ENST00000254351 RRP15Q9Y3B9 282 aaKnown RBP16.59■□□□□ 0.25
SDC1-201ENST00000254351 ADGRL3Q9HAR2 1447 aa16.58■□□□□ 0.25
SDC1-201ENST00000254351 IGSF1Q8N6C5 1336 aa16.58■□□□□ 0.25
SDC1-201ENST00000254351 SPTLC2O15270 562 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 KRT32Q14532 448 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 ZNF827Q17R98 1081 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 ABTB2Q8N961 1025 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 CCDC102AQ96A19 550 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 GDAP1L1Q96MZ0 367 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 USP42Q9H9J4 1324 aaKnown RBP16.58■□□□□ 0.24
SDC1-201ENST00000254351 PFKFB1P16118 471 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 LONRF2Q1L5Z9 754 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 AK7Q96M32 723 aa16.58■□□□□ 0.24
SDC1-201ENST00000254351 GIGYF1O75420 1035 aaPredicted RBP16.57■□□□□ 0.24
SDC1-201ENST00000254351 HOXC9P31274 260 aa16.57■□□□□ 0.24
SDC1-201ENST00000254351 ANKARQ7Z5J8 1434 aa16.57■□□□□ 0.24
SDC1-201ENST00000254351 C8orf76Q96K31 380 aa16.57■□□□□ 0.24
SDC1-201ENST00000254351 FOXN1O15353 648 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 PFKFB2O60825 505 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 ADALQ6DHV7 355 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 DHX32Q7L7V1 743 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 LINC00301Q8NCQ3 95 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 DRC1Q96MC2 740 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 FMN2Q9NZ56 1722 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 CCDC158Q5M9N0 1113 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 LEKR1Q6ZMV7 388 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 FUT8Q9BYC5 575 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 ATP5J2-PTCD1G3V325 749 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 DHX16O60231 1041 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 PTCD1O75127 700 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 FDPSP14324 419 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 ATP2B1P20020 1258 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 NLRP12P59046 1061 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 SART3Q15020 963 aaKnown RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 ZNF530Q6P9A1 599 aaPredicted RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 GPATCH11Q8N954 259 aa16.56■□□□□ 0.24
SDC1-201ENST00000254351 DBF4Q9UBU7 674 aaPredicted RBP16.56■□□□□ 0.24
SDC1-201ENST00000254351 KIF28PB7ZC32 967 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 WDHD1O75717 1129 aaPredicted RBP16.55■□□□□ 0.24
SDC1-201ENST00000254351 GTF2A1P52655 376 aaPredicted RBP16.55■□□□□ 0.24
SDC1-201ENST00000254351 SLC39A6Q13433 755 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 E2F4Q16254 413 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 NAA16Q6N069 864 aaPredicted RBP16.55■□□□□ 0.24
SDC1-201ENST00000254351 SMARCC2Q8TAQ2 1214 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 BAG1Q99933 345 aaPredicted RBP16.55■□□□□ 0.24
SDC1-201ENST00000254351 FAN1Q9Y2M0 1017 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 MED23Q9ULK4 1368 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 PLEKHG3A1L390 1219 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 CPLX1O14810 134 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 COBLO75128 1261 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 ALDH1L1O75891 902 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 MCMDC2Q4G0Z9 681 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 SNRKQ9NRH2 765 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 PHLPP2Q6ZVD8 1323 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 ITSN1Q15811 1721 aa16.55■□□□□ 0.24
SDC1-201ENST00000254351 NBPF6Q5VWK0 638 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 KSR2Q6VAB6 950 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 PROSER2Q86WR7 435 aaPredicted RBP16.54■□□□□ 0.24
SDC1-201ENST00000254351 NBPF4Q96M43 638 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 MYD88Q99836 296 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 PEAK1Q9H792 1746 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 MROH7-TTC4A0A0A0MT08 1334 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms