RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 TMUB1Q9BVT8 246 aa14.27□□□□□ -0.12
PCDHA3-201ENST00000522353 GOLT1BQ9Y3E0 138 aa14.27□□□□□ -0.12
PCDHA3-201ENST00000522353 B3GALNT1O75752 331 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 SNCGO76070 127 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 IGHV3-13P01766 116 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 IGHV3-7P01780 117 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 DMKNQ6E0U4 476 aaPredicted RBP14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 MS4A7Q9GZW8 240 aaPredicted RBP14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 CLCF1Q9UBD9 225 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 CYB5R1Q9UHQ9 305 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 YTHDF2Q9Y5A9 579 aaKnown RBP14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 SCN4AP35499 1836 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 ATP6V1FQ16864 119 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 RHOFQ9HBH0 211 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 MARF1Q9Y4F3 1742 aaKnown RBP14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 A0A1W2PPQ1 181 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 TGIF2Q9GZN2 237 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 CCL27Q9Y4X3 112 aa14.27□□□□□ -0.13
PCDHA3-201ENST00000522353 UQCC3Q6UW78 93 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 WNT2BQ93097 391 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 TMPRSS13Q9BYE2 586 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 MSL2Q9HCI7 577 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ANXA10Q9UJ72 324 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF320A2RRD8 509 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 GNG7O60262 68 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 PPP1R1AQ13522 171 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 SURF2Q15527 256 aaPredicted RBP14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 FFAR4Q5NUL3 377 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 SPNS3Q6ZMD2 512 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ZDHHC11Q9H8X9 412 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 PIPOXQ9P0Z9 390 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 MRPS18BQ9Y676 258 aaKnown RBP14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 CASP8AP2Q9UKL3 1982 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ONECUT2O95948 504 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 MMP16P51512 607 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 LINC00596Q86U02 117 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 TMEM18Q96B42 140 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF385AQ96PM9 386 aaKnown RBP14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 OR1A1Q9P1Q5 309 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 PILRAQ9UKJ1 303 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 OGG1O15527 345 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF205O95201 554 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 SLC25A5P05141 298 aaKnown RBP14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 CTSSP25774 331 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 FAM27BQ5VT28 67 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 LIAT1Q6ZQX7 453 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 R3HDM4Q96D70 268 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 RNF2Q99496 336 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 STARD10Q9Y365 291 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 CACNA1GO43497 2377 aa14.26□□□□□ -0.13
PCDHA3-201ENST00000522353 NUP214P35658 2090 aaPredicted RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 PTHLHP12272 177 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 ZCCHC14Q8WYQ9 949 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 SF3B6Q9Y3B4 125 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 COL4A5P29400 1685 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 IL13RA2Q14627 380 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 DTX4Q9Y2E6 619 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 POLR2AP24928 1970 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 PRSS23O95084 383 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 CD200P41217 278 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 ZP4Q12836 540 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 TGIF1Q15583 401 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 KCNMB1Q16558 191 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 NHLRC2Q8NBF2 726 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 FLYWCH2Q96CP2 140 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 LPAR2Q9HBW0 351 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 PCDHGA9Q9Y5G4 932 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 HS3ST3B1Q9Y662 390 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF883P0CG24 379 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 HOXB1P14653 301 aaPredicted RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 PMELP40967 661 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 ERVFC1-1P60608 527 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 RPL31P62899 125 aaKnown RBP14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 GPR137Q96N19 417 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 OR2J1Q9GZK6 312 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 NIT2Q9NQR4 276 aa14.25□□□□□ -0.13
PCDHA3-201ENST00000522353 C9orf170A2RU37 121 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF561Q8N587 486 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 ZMIZ1Q9ULJ6 1067 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 TXNDC12O95881 172 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 OPN1MWP04001 364 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 CTSDP07339 412 aaPredicted RBP14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 OPN1MW2P0DN77 364 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 OPN1MW3P0DN78 364 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 BCL3P20749 454 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 TEX261Q6UWH6 196 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 SHISA5Q8N114 240 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 WDR31Q8NA23 367 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 SLC26A10Q8NG04 563 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 ZNF596Q8TC21 504 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 CHST5Q9GZS9 411 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 SLC25A10Q9UBX3 287 aaPredicted RBP14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 U3KQ87 197 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 TRBV5-3A0A0A0MS03 114 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 SPNP16150 400 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 ERVFRD-1P60508 538 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 LYZP61626 148 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 PDZD11Q5EBL8 140 aa14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 GEMIN2O14893 280 aaKnown RBP14.24□□□□□ -0.13
PCDHA3-201ENST00000522353 TO15178 435 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms