RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LPAR5Q9H1C0 372 aa24.54■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A10PA6NDY2 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A18PA6NE21 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A16PA6NEW6 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A20PA6NIJ5 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A8PA6NJQ4 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A7PA6NKC0 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A22PA8MWA6 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A12PA8MX19 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A5PA8MXJ8 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A23PA8MXZ1 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 TGFAP01135 160 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A15PP0C7V4 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A13PP0C7W8 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A14PP0C7W9 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 FAM90A24PP0C7X0 464 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 EFNB2P52799 333 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 ATAD3CQ5T2N8 411 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 BTN2A1Q7KYR7 527 aa24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 URM1Q9BTM9 101 aaKnown RBP24.53■■□□□ 1.52
LIMCH1-211ENST00000509638 LOC105371242A0A075B767 164 aa24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 GPR37O15354 613 aa24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 EDDM3AQ14507 147 aa24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 SUMF2Q8NBJ7 301 aa24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 PPP1R35Q8TAP8 253 aa24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 POLR3KQ9Y2Y1 108 aaPredicted RBP24.52■■□□□ 1.52
LIMCH1-211ENST00000509638 A0A0A6YYD4 124 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 TMEM127O75204 238 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 ATXN7L3Q14CW9 347 aaPredicted RBP24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 CD276Q5ZPR3 534 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 GDPD3Q7L5L3 318 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 GLCCI1Q86VQ1 547 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 TMEM186Q96B77 213 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 DPCDQ9BVM2 203 aaPredicted RBP24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 SPACA1Q9HBV2 294 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 HIF1ANQ9NWT6 349 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 RCC2Q9P258 522 aaKnown RBP24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 RAB22AQ9UL26 194 aa24.51■■□□□ 1.51
LIMCH1-211ENST00000509638 TRAV20A0A0B4J274 112 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 RAB6AP20340 208 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 SIGIRRQ6IA17 410 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 OR5D13Q8NGL4 314 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 MMP26Q9NRE1 261 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 RSL24D1Q9UHA3 163 aaKnown RBP24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 RPUSD1Q9UJJ7 312 aaKnown RBP24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 MGST3O14880 152 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 CD5LO43866 347 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 ECDO95905 644 aaPredicted RBP24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 EDDM3BP56851 147 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 SCAND1P57086 179 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 PAX2Q02962 417 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 RAB12Q6IQ22 244 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 BPIFB2Q8N4F0 458 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 PTX4Q96A99 478 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 DCTN5Q9BTE1 182 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 MRI1Q9BV20 369 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 ETV7Q9Y603 341 aa24.5■■□□□ 1.51
LIMCH1-211ENST00000509638 IGHV2-70DA0A0C4DH43 119 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 PDCD6O75340 191 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 CSN2P05814 226 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 RORCP51449 518 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 DVL1P1P54792 670 aaPredicted RBP24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 C11orf91Q3C1V1 193 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 BRICD5Q6PL45 260 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 BIVMQ86UB2 503 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 OR4M1Q8NGD0 313 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 OR5H6Q8NGV6 325 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 DACT3Q96B18 629 aaPredicted RBP24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 POM121Q96HA1 1249 aa24.49■■□□□ 1.51
LIMCH1-211ENST00000509638 SONP18583 2426 aaKnown RBP24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 TEP1Q99973 2627 aaKnown RBP24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 SMIM31A0A1B0GVY4 71 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 ENSAO43768 121 aaKnown RBP24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 NKAPLQ5M9Q1 402 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 TPRX1Q8N7U7 411 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 NEK7Q8TDX7 302 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 C19orf12Q9NSK7 152 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 ABRACLQ9P1F3 81 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 PEX16Q9Y5Y5 336 aa24.48■■□□□ 1.51
LIMCH1-211ENST00000509638 TRBV23-1A0A0A0MS06 115 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 PPIAL4CA0A0B4J2A2 164 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 DPPA5A6NC42 116 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 VEGFCP49767 419 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 RPL31P62899 125 aaKnown RBP24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 FAM89BQ8N5H3 189 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 RAB40AQ8WXH6 277 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 KCTD12Q96CX2 325 aaKnown RBP24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 CYYR1Q96J86 154 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 NUDT16L1Q9BRJ7 211 aaKnown RBP24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 ING3Q9NXR8 418 aa24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 NSD1Q96L73 2696 aaPredicted RBP24.47■■□□□ 1.51
LIMCH1-211ENST00000509638 A0A0G2JMP0 313 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 A0A0X1KG70 313 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 SOCS1O15524 211 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 LY6G6DO95868 133 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 FUT3P21217 361 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 CHATP28329 748 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 BLVRBP30043 206 aaPredicted RBP24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 AESQ08117 197 aa24.46■■□□□ 1.51
LIMCH1-211ENST00000509638 DCAF12L2Q5VW00 463 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms