RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SFTA3P0C7M3 94 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 CPN1P15169 458 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 HTN1P15515 57 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 TMPRSS3P57727 454 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 TSPO2Q5TGU0 170 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 INO80CQ6PI98 192 aaPredicted RBP15.2■□□□□ 0.02
SHANK1-201ENST00000293441 ASB5Q8WWX0 329 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 RSRP1Q9BUV0 290 aa15.2■□□□□ 0.02
SHANK1-201ENST00000293441 J3KRW8 73 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 BGLAPP02818 100 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 MAP6Q96JE9 813 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 PCGF1Q9BSM1 259 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 SLIRPQ9GZT3 109 aaKnown RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 COL5A3P25940 1745 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 ZFP36L2P47974 494 aaKnown RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 GNG4P50150 75 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 ZNF501Q96CX3 271 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 SLC52A3Q9NQ40 469 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 NKX2-8O15522 239 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 SNCGO76070 127 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 TMUB1Q9BVT8 246 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 NEU3Q9UQ49 428 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 B4E171 279 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 RNASEK-C17orf49H0YIS7 233 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 FFAR1O14842 300 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 CST4P01036 141 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 TSPAN7P41732 249 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 FGF8P55075 233 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 LIAT1Q6ZQX7 453 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 OPN3Q9H1Y3 402 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 HEXA-AS1Q9H8Q6 139 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 CES1P1Q9UKY3 287 aa15.19■□□□□ 0.02
SHANK1-201ENST00000293441 MARF1Q9Y4F3 1742 aaKnown RBP15.19■□□□□ 0.02
SHANK1-201ENST00000293441 Q1RN00 199 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 ZBTB37Q5TC79 503 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 ALX3O95076 343 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 COX6B1P14854 86 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 PIGYQ3MUY2 71 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 VSTM2AQ8TAG5 236 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 SUMO1P63165 101 aaKnown RBP15.18■□□□□ 0.02
SHANK1-201ENST00000293441 GUK1Q16774 197 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 SH2D2AQ9NP31 389 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 TRAPPC1Q9Y5R8 145 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 IGHV1-45A0A0A0MS14 117 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 EPOPA6NHQ4 379 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 GNG7O60262 68 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 ZNF737O75373 536 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 CDC34P49427 236 aaPredicted RBP15.18■□□□□ 0.02
SHANK1-201ENST00000293441 MVDP53602 400 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 SCAND1P57086 179 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 CLN8Q9UBY8 286 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 COL11A2P13942 1736 aaPredicted RBP15.18■□□□□ 0.02
SHANK1-201ENST00000293441 CASP8AP2Q9UKL3 1982 aa15.18■□□□□ 0.02
SHANK1-201ENST00000293441 DYNLT3P51808 116 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 CLEC9AQ6UXN8 241 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 ZNF764Q96H86 408 aaPredicted RBP15.17■□□□□ 0.02
SHANK1-201ENST00000293441 ZNF385AQ96PM9 386 aaKnown RBP15.17■□□□□ 0.02
SHANK1-201ENST00000293441 C1RLQ9NZP8 487 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 TCTE3Q8IZS6 198 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 MAP1LC3B2A6NCE7 125 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 LY86O95711 162 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 TGIF2LYQ8IUE0 185 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR2C3Q8N628 320 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR10G4Q8NGN3 311 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR10G9Q8NGN4 311 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR10G7Q8NGN6 311 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 MAP1LC3BQ9GZQ8 125 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 NIT2Q9NQR4 276 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 ARG1P05089 322 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 CA10Q9NS85 328 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 YTHDF2Q9Y5A9 579 aaKnown RBP15.17■□□□□ 0.02
SHANK1-201ENST00000293441 TRAV39A0A0B4J263 110 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 RAB5AP20339 215 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 TPPP2P59282 170 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR10A7Q8NGE5 316 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 OR2J1Q9GZK6 312 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 SEMA7AO75326 666 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 PMCHP20382 165 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 POLR2GP62487 172 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHANK1-201ENST00000293441 IL13RA2Q14627 380 aa15.17■□□□□ 0.02
SHANK1-201ENST00000293441 DMKNQ6E0U4 476 aaPredicted RBP15.17■□□□□ 0.02
SHANK1-201ENST00000293441 ACP1P24666 158 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 GZMKP49863 264 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 AESQ08117 197 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 GALR1P47211 349 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 C10orf35Q96D05 121 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 ANXA10Q9UJ72 324 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 COL11A1P12107 1806 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-201ENST00000293441 SP9P0CG40 484 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 ECSCRQ19T08 205 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 ADAMTS17Q8TE56 1095 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 NUP214P35658 2090 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-201ENST00000293441 SLC23A3Q6PIS1 610 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 DYNLRB2Q8TF09 96 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 DYRK2Q92630 601 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 NOL4LQ96MY1 436 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-201ENST00000293441 SLC25A10Q9UBX3 287 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-201ENST00000293441 ADRA2AP08913 450 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 NAAAQ02083 359 aa15.16■□□□□ 0.02
SHANK1-201ENST00000293441 AANATQ16613 207 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms