RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 DUSP1P28562 367 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 CAV3P56539 151 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 CLDN12P56749 244 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 TMEM249Q2WGJ8 235 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 Q8NFD4 153 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 SLC25A28Q96A46 364 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 NEIL1Q96FI4 390 aaPredicted RBP24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 KCNK15Q9H427 330 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 KAAG1Q9UBP8 84 aa24.68■■□□□ 1.54
LIMCH1-211ENST00000509638 UBBP0CG47 229 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 GPR176Q14439 515 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 PIGYQ3MUY2 71 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 ATPAF1Q5TC12 328 aaPredicted RBP24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 ZNF788Q6ZQV5 615 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 SLC36A1Q7Z2H8 476 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 CD177Q8N6Q3 437 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 GHRLQ9UBU3 117 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 F8P00451 2351 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 NOTOA8MTQ0 251 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 AIPO00170 330 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 WNT2P09544 360 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 SELLP14151 372 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 CFPP27918 469 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 PRDX2P32119 198 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 PITPNBP48739 271 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 ZNF146Q15072 292 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 OSR2Q8N2R0 312 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 FAM46BQ96A09 425 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 STEAP1Q9UHE8 339 aa24.67■■□□□ 1.54
LIMCH1-211ENST00000509638 MALRD1Q5VYJ5 2156 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 FAM157AC9JC47 383 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 CRTAPO75718 401 aaPredicted RBP24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 BPNT1O95861 308 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 HAND1O96004 215 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 GTF2F2P13984 249 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 IL13RA1P78552 427 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 IKZF1Q13422 519 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 SFXN4Q6P4A7 337 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 TMEM104Q8NE00 496 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 C18orf12Q96KH6 178 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 PCDHB16Q9NRJ7 776 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 METRNQ9UJH8 293 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 ABCA1O95477 2261 aa24.66■■□□□ 1.54
LIMCH1-211ENST00000509638 SIGLEC5O15389 551 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 SERPINB10P48595 397 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 ESCO2Q56NI9 601 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 OR51T1Q8NGJ9 327 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 SDSLQ96GA7 329 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 CST11Q9H112 138 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 BANF2Q9H503 90 aa24.65■■□□□ 1.54
LIMCH1-211ENST00000509638 CSPG4Q6UVK1 2322 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 VSIG8P0DPA2 414 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 ARSBP15848 533 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 MGMTP16455 207 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 RBM11P57052 281 aaKnown RBP24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 OR10K2Q6IF99 312 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 SSBP3Q9BWW4 388 aaPredicted RBP24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 CLN8Q9UBY8 286 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 GLS2Q9UI32 602 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 ST3GAL6Q9Y274 331 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 MAB21L2Q9Y586 359 aa24.64■■□□□ 1.54
LIMCH1-211ENST00000509638 SLC2A2P11168 524 aaPredicted RBP24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 GNB2P62879 340 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 NHLRC3Q5JS37 347 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 ZNF841Q6ZN19 808 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 ZNRF1Q8ND25 227 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 OR51D1Q8NGF3 324 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 RAB2BQ8WUD1 216 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 FAM3DQ96BQ1 224 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 MED30Q96HR3 178 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 TMUB1Q9BVT8 246 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 LIN7BQ9HAP6 207 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 LPAR2Q9HBW0 351 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 DAPK2Q9UIK4 370 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 A0A0B4J203 849 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 DVL1O14640 695 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 PHF1O43189 567 aaPredicted RBP24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 FCN3O75636 299 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 IL1AP01583 271 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 IGHV4-31P0DP07 118 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 CPT2P23786 658 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 RPS19P39019 145 aaKnown RBP24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 CAPZA1P52907 286 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 COL10A1Q03692 680 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 IL13RA2Q14627 380 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 ZNF561Q8N587 486 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 ASCC1Q8N9N2 400 aaKnown RBP24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 TMEM185AQ8NFB2 350 aa24.63■■□□□ 1.53
LIMCH1-211ENST00000509638 ARHGAP32A7KAX9 2087 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 CD99P14209 185 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 QRFPP83859 136 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 UNC119Q13432 240 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 FGFRL1Q8N441 504 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 NDNFQ8TB73 568 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 MRPS24Q96EL2 167 aaKnown RBP24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 SELENOIQ9C0D9 397 aa24.62■■□□□ 1.53
LIMCH1-211ENST00000509638 SIRPB1O00241 398 aa24.61■■□□□ 1.53
LIMCH1-211ENST00000509638 SH2D1BO14796 132 aa24.61■■□□□ 1.53
LIMCH1-211ENST00000509638 NOL3O60936 208 aaKnown RBP24.61■■□□□ 1.53
LIMCH1-211ENST00000509638 MPIG6BO95866 241 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms