RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 UQCC1Q9NVA1 299 aa11.72□□□□□ -0.53
GPC1-209ENST00000495100 ANXA10Q9UJ72 324 aa11.72□□□□□ -0.53
GPC1-209ENST00000495100 SH3BGRL2Q9UJC5 107 aa11.72□□□□□ -0.53
GPC1-209ENST00000495100 MAP1AP78559 2803 aaPredicted RBP11.71□□□□□ -0.53
GPC1-209ENST00000495100 EIF1BO60739 113 aaKnown RBP11.71□□□□□ -0.53
GPC1-209ENST00000495100 AADACP22760 399 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 MAGEA5P43359 124 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 PSG4Q00888 419 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 NSUN5P2Q63ZY6 315 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 FAM166AQ6J272 317 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 SKA3Q8IX90 412 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 OSR2Q8N2R0 312 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 TPRX1Q8N7U7 411 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 ZDHHC22Q8N966 263 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 C12orf57Q99622 126 aa11.71□□□□□ -0.53
GPC1-209ENST00000495100 TK1P04183 234 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 SERPINE2P07093 398 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 SPP1P10451 314 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 NR2C1P13056 603 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 ZNF17P17021 662 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 CA6P23280 308 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 MRPS34P82930 218 aaKnown RBP11.71□□□□□ -0.54
GPC1-209ENST00000495100 LPCAT3Q6P1A2 487 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 SLC25A47Q6Q0C1 308 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 ARRDC1Q8N5I2 433 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 OR2G3Q8NGZ4 309 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 CPT1CQ8TCG5 803 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 SLC25A43Q8WUT9 341 aaPredicted RBP11.71□□□□□ -0.54
GPC1-209ENST00000495100 RTBDNQ9BSG5 229 aaPredicted RBP11.71□□□□□ -0.54
GPC1-209ENST00000495100 MRPL13Q9BYD1 178 aaKnown RBP11.71□□□□□ -0.54
GPC1-209ENST00000495100 LOXL2Q9Y4K0 774 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 LAMA5O15230 3695 aa11.71□□□□□ -0.54
GPC1-209ENST00000495100 TERTO14746 1132 aaKnown RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 FSTP19883 344 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 HIKESHIQ53FT3 197 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 ZNF441Q8N8Z8 693 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 EMG1Q92979 244 aaKnown RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 SDSLQ96GA7 329 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 CLCC1Q96S66 551 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 HINT2Q9BX68 163 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SHARPINQ9H0F6 387 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 NECAP2Q9NVZ3 263 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 TRAPPC2LH3BP13 241 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 CBR3O75828 277 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SNAPINO95295 136 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 CRYBA1P05813 215 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SCTP09683 121 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 LIFP15018 202 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 FPR2P25090 351 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 ENDOGQ14249 297 aaKnown RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 CNN3Q15417 329 aaKnown RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 OR10AD1Q8NGE0 317 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 OR52H1Q8NGJ2 320 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 LHFPL5Q8TAF8 219 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 NANPQ8TBE9 248 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SAP25Q8TEE9 199 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 EXTL1Q92935 676 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 ABHD14AQ9BUJ0 271 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 ZNF587BE7ETH6 402 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 ISG15P05161 165 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 NTF4P34130 210 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 FGF8P55075 233 aaPredicted RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 DSCR4P56555 118 aaPredicted RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 MLF1P58340 268 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 RAB1AP62820 205 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SUPT4H1P63272 117 aaKnown RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 PMP22Q01453 160 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 TMEM267Q0VDI3 215 aaPredicted RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 PCOLCEQ15113 449 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 TESK1Q15569 626 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 MPPED2Q15777 294 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 FDX2Q6P4F2 183 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 HSD17B13Q7Z5P4 300 aaPredicted RBP11.7□□□□□ -0.54
GPC1-209ENST00000495100 RXFP4Q8TDU9 374 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 PSMF1Q92530 271 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 HS3ST6Q96QI5 342 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SYT3Q9BQG1 590 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 SLC2A9Q9NRM0 540 aa11.7□□□□□ -0.54
GPC1-209ENST00000495100 A0A1B0GTQ1 180 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 A0A1W2PPE2 198 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 NKX2-6A6NCS4 301 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 A8MXK9 166 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 DEFB108AA8MXU0 73 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 HGFACQ04756 655 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 IP6K3Q96PC2 410 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 CNTNAP3Q9BZ76 1288 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 SLC7A10Q9NS82 523 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 TLN1Q9Y490 2541 aaKnown RBP11.69□□□□□ -0.54
GPC1-209ENST00000495100 F8VVB4 439 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 F8VWA3 439 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 ADAM20O43506 726 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 ZIC3O60481 467 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 CD74P04233 296 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 UMODP07911 640 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 NQO2P16083 231 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 BCL3P20749 454 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 GSK3AP49840 483 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 F2RL1P55085 397 aa11.69□□□□□ -0.54
GPC1-209ENST00000495100 CXorf66Q5JRM2 361 aaPredicted RBP11.69□□□□□ -0.54
GPC1-209ENST00000495100 TMEM164Q5U3C3 297 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms