RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 K7N7A8 449 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 CST7O76096 145 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 MBP02144 154 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 SRP19P09132 144 aaKnown RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 HNRNPA2B1P22626 353 aaKnown RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 ARL6IP1Q15041 203 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 TMEM176BQ3YBM2 270 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 LGI3Q8N145 548 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 TMEM234Q8WY98 164 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 CABLES2Q9BTV7 478 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 SIRT7Q9NRC8 400 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 F5H5K5 113 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 RER1O15258 196 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 GUCA1AP43080 201 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 HLA-DRB3P79483 266 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 IGLV3-21P80748 117 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 IL13RA2Q14627 380 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 CMTM1Q8IZ96 169 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 OR2C3Q8N628 320 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 THAP3Q8WTV1 239 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 SMDT1Q9H4I9 107 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 KIAA1456Q9P272 454 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 GAB2Q9UQC2 676 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 TRIOO75962 3097 aa11.27□□□□□ -0.61
SFSWAP-209ENST00000540469 HSD17B6O14756 317 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 MAS1LP35410 378 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 GLIPR1P48060 266 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 UCP2P55851 309 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 CD81P60033 236 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 GABREP78334 506 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 COL13A1Q5TAT6 717 aaPredicted RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 SHDQ96IW2 340 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 SYT3Q9BQG1 590 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 ARV1Q9H2C2 271 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 MCTS1Q9ULC4 181 aaKnown RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 PHF3Q92576 2039 aaKnown RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 BRWD1Q9NSI6 2320 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 BLACEA4D250 179 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 SSSCA1O60232 199 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 HERV-K104P61576 105 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 TAF9Q16594 264 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 SPIN3Q5JUX0 258 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 C1orf147Q96MC9 270 aaPredicted RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 HIST1H2BLQ99880 126 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 GPR87Q9BY21 358 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 CUTCQ9NTM9 273 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 ANXA10Q9UJ72 324 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 ANAPC10Q9UM13 185 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 CLDN16Q9Y5I7 305 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 ALG1L2C9J202 215 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 MS4A18H0YCH9 400 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 KLF8O95600 359 aaPredicted RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 CD200P41217 278 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 RAB4BP61018 213 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 RUNX1Q01196 453 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 MS4A18Q3C1V0 323 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 LBHQ53QV2 105 aaPredicted RBP11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 ZNF880Q6PDB4 577 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 DOK3Q7L591 496 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 KCNK17Q96T54 332 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 SLC25A31Q9H0C2 315 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 MOB1AQ9H8S9 216 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 NECAP2Q9NVZ3 263 aa11.26□□□□□ -0.61
SFSWAP-209ENST00000540469 A0A087WWC5 75 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 SHISA8B8ZZ34 492 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 CLDN34H7C241 214 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 FAHP16930 419 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 NTSR1P30989 418 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 NSDHLQ15738 373 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 OR10S1Q8NGN2 331 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 OR5C1Q8NGR4 320 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 OR13D1Q8NGV5 346 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 FAAP24Q9BTP7 215 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 SDK1Q7Z5N4 2213 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 FAM221BA6H8Z2 402 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 AKT2P31751 481 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 NKX2-1P43699 371 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 TLE4Q04727 773 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 FOXO1Q12778 655 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 RTL10Q7L3V2 364 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 NECAP1Q8NC96 275 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 ABHD5Q8WTS1 349 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 C2orf88Q9BSF0 95 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 NKX2-4Q9H2Z4 354 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 CHST11Q9NPF2 352 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 FOXD3Q9UJU5 478 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 HSF4Q9ULV5 492 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 UBE2J1Q9Y385 318 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 COL6A3P12111 3177 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 CLPSP04118 112 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 IDH3GP51553 393 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 H3F3AP84243 136 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 TMEM196Q5HYL7 178 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 BRICD5Q6PL45 260 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 LIAT1Q6ZQX7 453 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 C20orf196Q8IYI0 205 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 OR11L1Q8NGX0 322 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 YPEL4Q96NS1 127 aa11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 C8orf33Q9H7E9 229 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-209ENST00000540469 SLC2A9Q9NRM0 540 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms