RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ACBD4Q8NC06 268 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 OR2V1Q8NHB1 315 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 RHOFQ9HBH0 211 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 SPACA1Q9HBV2 294 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 CENPMQ9NSP4 180 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 FAM212BQ9NTI7 297 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 MCTS1Q9ULC4 181 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 SMG1Q96Q15 3661 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 USP24Q9UPU5 2620 aa7.65□□□□□ -1.19
LIMCH1-209ENST00000509277 PKDREJQ9NTG1 2253 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ADAM10O14672 748 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 DPM1O60762 260 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 PRAF2O60831 178 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 MPZL1O95297 269 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ZNF44P15621 663 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 CDKN2AP42771 156 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ZNF84P51523 738 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 UCNP55089 124 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 PRPS1P60891 318 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 RPS27AP62979 156 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 UBA52P62987 128 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 SLC35A1P78382 337 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 HNF4GQ14541 408 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 C12orf73Q69YU5 71 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 GFRALQ6UXV0 394 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 LINC00346Q8IVM7 164 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 JAGN1Q8N5M9 183 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 CCDC107Q8WV48 283 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 SMIM4Q8WVI0 70 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 TSPAN32Q96QS1 320 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 UQCC1Q9NVA1 299 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 TAS2R5Q9NYW4 299 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 IRGMA1A4Y4 181 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 GJE1A6NN92 205 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 RAB3DO95716 219 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ZNF100Q8IYN0 542 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 CNTNAP3Q9BZ76 1288 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ISYNA1Q9NPH2 558 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 IL20Q9NYY1 176 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 SPRR3Q9UBC9 169 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 EXPH5Q8NEV8 1989 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A1B0GUH1 482 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A1W2PR80 420 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 PLPP3O14495 311 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 ATXN7O15265 892 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 IFNA6P05013 189 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 CCNOP22674 350 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 IL13RA1P78552 427 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 MRPS10P82664 201 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 AAED1Q7RTV5 226 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 TUSC5Q8IXB3 177 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 POMGNT2Q8NAT1 580 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 DTD1Q8TEA8 209 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 MITD1Q8WV92 249 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 MISP3Q96FF7 219 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 TIMP4Q99727 224 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 GPR61Q9BZJ8 451 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 AUP1Q9Y679 476 aa7.64□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A087WZY1 265 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A096LPE4 126 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 TRGV8A0A0C4DH27 118 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A1W2PPZ6 126 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 TMEM82A0PJX8 343 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 GATCO43716 136 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 HLA-DQB1P01920 261 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 HOXB5P09067 269 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 PATE4P0C8F1 98 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 OR8G3PP0DMU2 310 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 MUC1P15941 1255 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 SPI1P17947 270 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 LAP3P28838 519 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 KLF9Q13886 244 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 ZFP62Q8NB50 900 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 SLC25A43Q8WUT9 341 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 UPB1Q9UBR1 384 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 COA3Q9Y2R0 106 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 A0A0A6YYH2 397 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 A6NJ64 397 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 SURF4O15260 269 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 P2RY4P51582 365 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 OR8G1Q15617 311 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 GFI1BQ5VTD9 330 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 OR51B6Q9H340 312 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 SH2D2AQ9NP31 389 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 RASL12Q9NYN1 266 aa7.63□□□□□ -1.19
LIMCH1-209ENST00000509277 SLC22A20A6NK97 555 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 ZNF727A8MUV8 499 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MS4A18H0YCH9 400 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MRPL33O75394 65 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MBPP02686 304 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 ASAH2BP0C7U1 165 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 PRF1P14222 555 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 ASCL1P50553 236 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MMP15P51511 669 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 RPL27P61353 136 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MS4A18Q3C1V0 323 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 AWAT1Q58HT5 328 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 MESTQ5EB52 335 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 LINC00114Q6XXX2 140 aa7.62□□□□□ -1.19
LIMCH1-209ENST00000509277 DPY19L2P2Q6ZN68 376 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms