RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CXCL13O43927 109 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 OR7C2O60412 319 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 NUDT3O95989 172 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 ERVFRD-1P60508 538 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PJVKQ0ZLH3 352 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 ST3GAL2Q16842 350 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 C6orf15Q6UXA7 325 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 CCL4L1Q8NHW4 92 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2J1Q9GZK6 312 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 IL21Q9HBE4 155 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PITPNC1Q9UKF7 332 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 IGLV3-16A0A075B6K0 115 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 CLEC18AA5D8T8 446 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 FBLL1A6NHQ2 334 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 WNT1P04628 370 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 GLB1P16278 677 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 GLRA1P23415 457 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 FUT6P51993 359 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 BPIFB3P59826 476 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 ERHP84090 104 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF687Q8N1G0 1237 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 CLEC18CQ8NCF0 446 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 OR8D4Q8NGM9 314 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 SPSB1Q96BD6 273 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 PELI1Q96FA3 418 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 OR6C3Q9NZP0 311 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 LRP12Q9Y561 859 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 CLDN34H7C241 214 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 GP1BAP07359 652 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 HLXQ14774 488 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 CST9Q5W186 159 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 CPEB3Q8NE35 698 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 IP6K3Q96PC2 410 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 TMEM191AQ9H0A3 160 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 KCNE3Q9Y6H6 103 aa9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 MYO5AQ9Y4I1 1855 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-203ENST00000396595 NKX2-2O95096 273 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 SLC25A4P12235 298 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 ANKRD33Q7Z3H0 272 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 TMEM251Q8N6I4 163 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 NOXO1Q8NFA2 376 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 OR2M3Q8NG83 312 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 ATOH1Q92858 354 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 NTNG2Q96CW9 530 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 IGHA2P01877 340 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 SLC25A6P12236 298 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 CLDN15P56746 228 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 RAE1P78406 368 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 DRAM2Q6UX65 266 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 LRP11Q86VZ4 500 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 ZADH2Q8N4Q0 377 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 COMMD5Q9GZQ3 224 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 PHIPQ8WWQ0 1821 aa9.21□□□□□ -0.94
LIMCH1-203ENST00000396595 FIGNL2A6NMB9 653 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 OR5G3P0C626 314 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 FOXF1Q12946 379 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 SMAD4Q13485 552 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 CYB5R2Q6BCY4 276 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 BTNL3Q6UXE8 466 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 C4orf45Q96LM5 186 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 PECRQ9BY49 303 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 FBXO4Q9UKT5 387 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 EVPLQ92817 2033 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 KCNE1BA0A087WTH5 132 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 PPM1DO15297 605 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 FAHP16930 419 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 PCMT1P22061 227 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 ABI3BPQ7Z7G0 1075 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 GPX7Q96SL4 187 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 MENTQ9BUN1 341 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 NMES1Q9C002 83 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 ADGRL4Q9HBW9 690 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 MMP25Q9NPA2 562 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 LOXHD1Q8IVV2 1947 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 FAM24AA6NFZ4 105 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 RGS13O14921 159 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 SEMA7AO75326 666 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 FUT3P21217 361 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 TSEN54Q7Z6J9 526 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 LINC00469Q8N7U9 141 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 OR52N4Q8NGI2 321 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 ERGIC1Q969X5 290 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 TMED3Q9Y3Q3 217 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 A0A1B0GV90 55 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 PMP22Q01453 160 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 GSG1Q2KHT4 349 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 PTCRAQ6ISU1 281 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 ZNF600Q6ZNG1 722 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 BPIFA4PQ86YQ2 179 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 C8orf44Q96CB5 159 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 MRGPRX1Q96LB2 322 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 CRYM-AS1A6NIL9 109 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 G6PCP35575 357 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 CCL11P51671 97 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 INSM1Q01101 510 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 DHRS2Q13268 280 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 WDR38Q5JTN6 314 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 OTPQ5XKR4 325 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 DEGS2Q6QHC5 323 aa9.2□□□□□ -0.94
LIMCH1-203ENST00000396595 NAT8BQ9UHF3 227 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms