RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 BAMBIQ13145 260 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 CRIP3Q6Q6R5 217 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ALKAL2Q6UX46 152 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PLXDC2Q6UX71 529 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 GALNTL5Q7Z4T8 443 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PEG10Q86TG7 708 aaKnown RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 LHFPL1Q86WI0 220 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 INO80EQ8NBZ0 244 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 ZBTB44Q8NCP5 570 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ADAD2Q8NCV1 583 aaKnown RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 CSNK2A3Q8NEV1 391 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 COQ8AQ8NI60 647 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PPP1R1CQ8WVI7 109 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PHYHIPLQ96FC7 376 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 REEP6Q96HR9 211 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 FAM173AQ9BQD7 235 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 NMES1Q9C002 83 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 RAB18Q9NP72 206 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PCDHB16Q9NRJ7 776 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 B4GALT7Q9UBV7 327 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ATPIF1Q9UII2 106 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 EDARQ9UNE0 448 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 TNRC18O15417 2968 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 LAMA1P25391 3075 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 BCL2L11O43521 198 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 FARS2O95363 451 aaKnown RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 SFT2D2O95562 160 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 DBHP09172 617 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 LIPCP11150 499 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 SERPINA2P20848 420 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 SNU13P55769 128 aaKnown RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 MTCP1P56278 107 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 SNAI3Q3KNW1 292 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PLEKHN1Q494U1 663 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 WIPI1Q5MNZ9 446 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 TMEM164Q5U3C3 297 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 LHFPL2Q6ZUX7 228 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 OR5AP2Q8NGF4 316 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 NPRL2Q8WTW4 380 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 CASTOR1Q8WTX7 329 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ZNF837Q96EG3 531 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 POM121Q96HA1 1249 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 FOXB1Q99853 325 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 PPA2Q9H2U2 334 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 GPR35Q9HC97 309 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ZNF230Q9UIE0 474 aaPredicted RBP12.98□□□□□ -0.33
NUP54-217ENST00000514987 HSF4Q9ULV5 492 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 MFSD2BA6NFX1 497 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 FIGNL2A6NMB9 653 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 RRP8O43159 456 aaKnown RBP12.97□□□□□ -0.33
NUP54-217ENST00000514987 LCATP04180 440 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 HPNP05981 417 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 RFPL3SP0C7P2 107 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 TMEM225BP0DP42 221 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ZNF32P17041 273 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 HTR5AP47898 357 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 GFRA1P56159 465 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 CHRFAM7AQ494W8 412 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ZNF774Q6NX45 483 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ASCL4Q6XD76 172 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 KCTD9Q7L273 389 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 C1QL2Q7Z5L3 287 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 OR5D18Q8NGL1 313 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 SUN5Q8TC36 379 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 C17orf50Q8WW18 174 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ROBO4Q8WZ75 1007 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ST8SIA2Q92186 375 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 PSMF1Q92530 271 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 EMG1Q92979 244 aaKnown RBP12.97□□□□□ -0.33
NUP54-217ENST00000514987 PIGTQ969N2 578 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 MRPS24Q96EL2 167 aaKnown RBP12.97□□□□□ -0.33
NUP54-217ENST00000514987 THOC3Q96J01 351 aaKnown RBP12.97□□□□□ -0.33
NUP54-217ENST00000514987 Q96M66 194 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ST6GALNAC5Q9BVH7 336 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 LINC00470Q9BZP3 86 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 OR2H1Q9GZK4 316 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 FN3KRPQ9HA64 309 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 ELL3Q9HB65 397 aaPredicted RBP12.97□□□□□ -0.33
NUP54-217ENST00000514987 SDHAF2Q9NX18 166 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 LRFN1Q9P244 771 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 OSGIN2Q9Y236 505 aa12.97□□□□□ -0.33
NUP54-217ENST00000514987 IGKV3D-15A0A087WSY6 115 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 C5orf51A6NDU8 294 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 FAM25EA8MYX2 175 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 KRBOX1C9JBD0 128 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 MASP2O00187 686 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 CCSO14618 274 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 CSTBP04080 98 aaKnown RBP12.96□□□□□ -0.33
NUP54-217ENST00000514987 PSMB6P28072 239 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 DLSTP36957 453 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 RGS19P49795 217 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 FOXO1Q12778 655 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 RSU1Q15404 277 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 CEACAM16Q2WEN9 425 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 ABHD17BQ5VST6 288 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 TMEM42Q69YG0 159 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 EIF4E3Q8N5X7 224 aaKnown RBP12.96□□□□□ -0.33
NUP54-217ENST00000514987 PCNPQ8WW12 178 aaKnown RBP12.96□□□□□ -0.33
NUP54-217ENST00000514987 SEC22AQ96IW7 307 aa12.96□□□□□ -0.33
NUP54-217ENST00000514987 VRK1Q99986 396 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms