RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SPNS3Q6ZMD2 512 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM25Q86YD3 366 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 HIST3H2BBQ8N257 126 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR51L1Q8NGJ5 315 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 ELSPBP1Q96BH3 223 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SDSLQ96GA7 329 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 LRRC3BQ96PB8 259 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MOB1AQ9H8S9 216 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 CHODLQ9H9P2 273 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAB22AQ9UL26 194 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TMED7Q9Y3B3 224 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 STRAPQ9Y3F4 350 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 B4DEV8 164 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 H7C1Q1 480 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR5H8P0DN80 308 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAC2P15153 192 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 LAP3P28838 519 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 SNCAP37840 140 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PBX2P40425 430 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 GNMTQ14749 295 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 APCDD1LQ8NCL9 501 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 EMG1Q92979 244 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR2M4Q96R27 311 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 GABRG3Q99928 467 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 FBXO34Q9NWN3 711 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 B9D1Q9UPM9 204 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 TRIP12Q14669 1992 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 PITX3O75364 302 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DKK1O94907 266 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DCNP07585 359 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 VIPR2P41587 438 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB109BQ30KR1 87 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 REC114Q7Z4M0 266 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 BEST3Q8N1M1 668 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR5H2Q8NGV7 314 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 CA5BP1Q8WTZ4 195 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RAB3CQ96E17 227 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 C2orf50Q96LR7 162 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 NUDT22Q9BRQ3 303 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 NXF5Q9H1B4 397 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 OR2S2Q9NQN1 319 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 FAM206AQ9NX38 181 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 RPH3ALQ9UNE2 315 aa4.73□□□□□ -1.65
SYNE1-220ENST00000471834 MTCL1Q9Y4B5 1905 aaKnown RBP4.73□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A10PA6NDY2 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A18PA6NE21 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A16PA6NEW6 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A20PA6NIJ5 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A8PA6NJQ4 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A7PA6NKC0 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A22PA8MWA6 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A12PA8MX19 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A5PA8MXJ8 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A23PA8MXZ1 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 RNASEK-C17orf49H0YIS7 233 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 KNG1P01042 644 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HSPB1P04792 205 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 GYPBP06028 91 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A15PP0C7V4 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A13PP0C7W8 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A14PP0C7W9 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM90A24PP0C7X0 464 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PET100P0DJ07 73 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CTHP32929 405 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 APOBEC1P41238 236 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CLDN12P56749 244 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PAPD4Q6PIY7 484 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PCNPQ8WW12 178 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SGCZQ96LD1 299 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TINAGL1Q9GZM7 467 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM230AA0A1W2PPH8 454 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 A0A1W2PQU0 124 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ALG1L2C9J202 215 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 RAD51DO75771 328 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 AHSA1O95433 338 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SEMA4FO95754 770 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SLC25A6P12236 298 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PSMB5P28074 263 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TNFSF10P50591 281 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 MALLQ13021 153 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM53BQ14153 422 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CST6Q15828 149 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HAGHQ16775 308 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 LTC4SQ16873 150 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 Q3ZCU0 254 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TMEFF1Q8IYR6 380 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 AGBL5Q8NDL9 886 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OR52R1Q8NGF1 315 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 RXFP4Q8TDU9 374 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 DOK5Q9P104 306 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TRBV11-1A0A0K0K1C0 115 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 NPIPB11E5RHQ5 1161 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HSD17B6O14756 317 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HTR2CP28335 458 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SOX8P57073 446 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TMPRSS3P57727 454 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HHEXQ03014 270 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 BEX5Q5H9J7 111 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PLCXD3Q63HM9 321 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OPN5Q6U736 354 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms