RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ST8SIA2Q92186 375 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 HAS2Q92819 552 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 TMEM230Q96A57 120 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 INTS12Q96CB8 462 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF845Q96IR2 970 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 P4HTMQ9NXG6 502 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 ANAPC10Q9UM13 185 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 PCDHGA1Q9Y5H4 931 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 NCOR1O75376 2440 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 FAM230AA0A1W2PPH8 454 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 RNF222A6NCQ9 220 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF716A6NP11 495 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 SPRY1O43609 319 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 IGHV3-9P01782 118 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 TMEM225BP0DP42 221 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 GDF1P27539 372 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 SERPINF1P36955 418 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 OR3A2P47893 321 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 LUMP51884 338 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 MTCP1P56278 107 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 NKAPLQ5M9Q1 402 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 VAX1Q5SQQ9 334 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 FAHD2BQ6P2I3 314 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 GALNTL5Q7Z4T8 443 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 FAM219AQ8IW50 185 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 OR13G1Q8NGZ3 307 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 OR1S1Q8NH92 325 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 FGFBP3Q8TAT2 258 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 FAHD2AQ96GK7 314 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 SF3B5Q9BWJ5 86 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF701Q9NV72 531 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 GPR132Q9UNW8 380 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 DOCK10Q96BY6 2186 aa16.03■□□□□ 0.16
SHKBP1-201ENST00000291842 SYNGR3O43761 229 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 LCATP04180 440 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF32P17041 273 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 ACP1P24666 158 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 CALCRP30988 508 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 KCNRGQ8N5I3 272 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 SEMA6DQ8NFY4 1073 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 ABHD3Q8WU67 409 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 C17orf50Q8WW18 174 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 REEP6Q96HR9 211 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 HDHD3Q9BSH5 251 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 TMEM38BQ9NVV0 291 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 EHFQ9NZC4 300 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF581Q9P0T4 197 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 MBD2Q9UBB5 411 aa16.02■□□□□ 0.16
SHKBP1-201ENST00000291842 A0A0D9SG52 128 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 KANTRA0A1W2PQU2 76 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 FOXI3A8MTJ6 420 aaPredicted RBP16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 IGHEP01854 428 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 ICAM2P13598 275 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 HLA-GP17693 338 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 CRYGSP22914 178 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 TMEM128Q5BJH2 165 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 RAB11FIP2Q7L804 512 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 PDZD9Q8IXQ8 264 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 GPR137CQ8N3F9 429 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 ARRDC1-AS1Q9H2J1 176 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 PFDN2Q9UHV9 154 aa16.02■□□□□ 0.15
SHKBP1-201ENST00000291842 IGKV1D-8A0A087WSZ0 117 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ZNHIT1O43257 154 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ADAP1O75689 374 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 GP1BAP07359 652 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 SLC25A4P12235 298 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 GLRA1P23415 457 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 CYB561P49447 251 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ARPC4P59998 168 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 RAB35Q15286 201 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 CLEC18BQ6UXF7 455 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ARRDC1Q8N5I2 433 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 OR1F12Q8NHA8 337 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 THAP6Q8TBB0 222 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 KCNE4Q8WWG9 221 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ZNF471Q9BX82 626 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 MCTS1Q9ULC4 181 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 MPTX1A8MV57 137 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 HPP00738 406 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 ALDH3B1P43353 468 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 SSPNQ14714 243 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 CEACAM16Q2WEN9 425 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 AADACL3Q5VUY0 350 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 OR52H1Q8NGJ2 320 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 OR2V1Q8NHB1 315 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 NECAB3Q96P71 396 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 RTBDNQ9BSG5 229 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 GHRLQ9UBU3 117 aa16.01■□□□□ 0.15
SHKBP1-201ENST00000291842 IGKV1-27A0A075B6S5 117 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 DBX1A6NMT0 343 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 APOC1P02654 83 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 HTR5AP47898 357 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 SRYQ05066 204 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 SIGLEC14Q08ET2 396 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 FAM189A2Q15884 450 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 ACTBL2Q562R1 376 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 THOC3Q96J01 351 aaKnown RBP16■□□□□ 0.15
SHKBP1-201ENST00000291842 DHRS9Q9BPW9 319 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 PLEKHJ1Q9NW61 149 aa16■□□□□ 0.15
SHKBP1-201ENST00000291842 JMJD7P0C870 316 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms