RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CSNK2A3Q8NEV1 391 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 OR1M1Q8NGA1 313 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 TMEM163Q8TC26 289 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 RAB40AQ8WXH6 277 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 CENPNQ96H22 339 aaPredicted RBP15.31■□□□□ 0.04
CLN3-202ENST00000355477 IL4I1Q96RQ9 567 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 MRI1Q9BV20 369 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 PAPOLGQ9BWT3 736 aaKnown RBP15.31■□□□□ 0.04
CLN3-202ENST00000355477 CTSZQ9UBR2 303 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 CLN8Q9UBY8 286 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 OAZ3Q9UMX2 235 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 IGHV2-70DA0A0C4DH43 119 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 KIR2DS1A0A191URI9 304 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 hCG_1807616A0A1W2PRN6 198 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 OOEPA6NGQ2 149 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 CSNK2BP67870 215 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 ROM1Q03395 351 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 ARMCX4Q5H9R4 360 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 NXNL2Q5VZ03 156 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 KCTD18Q6PI47 426 aaPredicted RBP15.3■□□□□ 0.04
CLN3-202ENST00000355477 FAM90A1Q86YD7 464 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 BPIFB2Q8N4F0 458 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 PYDC1Q8WXC3 89 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 PPP1R14AQ96A00 147 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 ITPKCQ96DU7 683 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 OR8B4Q96RC9 309 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 CNN2Q99439 309 aaKnown RBP15.3■□□□□ 0.04
CLN3-202ENST00000355477 MROQ9BYG7 248 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 PRRG3Q9BZD7 231 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 ESM1Q9NQ30 184 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 FAM206AQ9NX38 181 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 ZNF69Q9UC07 566 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 NUP50Q9UKX7 468 aa15.3■□□□□ 0.04
CLN3-202ENST00000355477 IGHV3OR15-7A0A075B7D8 119 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 TMEM269A0A1B0GVZ9 245 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 ZNF850A8MQ14 1090 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 PHYHO14832 338 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 MAGEB4O15481 346 aaPredicted RBP15.29■□□□□ 0.04
CLN3-202ENST00000355477 FCN3O75636 299 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 GYPAP02724 150 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 GNALP38405 381 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 PRDX4Q13162 271 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 TUSC1Q2TAM9 212 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 BTNL3Q6UXE8 466 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 WDR82Q6UXN9 313 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 ZNF679Q8IYX0 411 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 BCL6BQ8N143 479 aaPredicted RBP15.29■□□□□ 0.04
CLN3-202ENST00000355477 GALNT4Q8N4A0 578 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 LRRC29Q8WV35 223 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 OR5P3Q8WZ94 311 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 NUDT16L1Q9BRJ7 211 aaKnown RBP15.29■□□□□ 0.04
CLN3-202ENST00000355477 SUCNR1Q9BXA5 334 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 FGF23Q9GZV9 251 aaPredicted RBP15.29■□□□□ 0.04
CLN3-202ENST00000355477 RASSF4Q9H2L5 321 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 ADGRL4Q9HBW9 690 aa15.29■□□□□ 0.04
CLN3-202ENST00000355477 H2AFY2Q9P0M6 372 aaPredicted RBP15.29■□□□□ 0.04
CLN3-202ENST00000355477 TRAV38-1A0A0B4J264 116 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ACOD1A6NK06 481 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 SAC3D1A6NKF1 404 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 C22orf46C9J442 243 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ADAM20O43506 726 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ZNF254O75437 659 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 CST4P01036 141 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 IGHV4-38-2P0DP08 117 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 FPR2P25090 351 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ELF3P78545 371 aaPredicted RBP15.28■□□□□ 0.04
CLN3-202ENST00000355477 KCNJ8Q15842 424 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 SLC35F2Q8IXU6 374 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ZFAND2BQ8WV99 257 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 ASB17Q8WXJ9 295 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 PIGCQ92535 297 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 SEH1LQ96EE3 360 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 APOL4Q9BPW4 351 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 MICU1Q9BPX6 476 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 OSBPL10Q9BXB5 764 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 PBOV1Q9GZY1 135 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 TLNRD1Q9H1K6 362 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 RNPEPL1Q9HAU8 725 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 SMURF1Q9HCE7 757 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 MPC1Q9Y5U8 109 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 TMEM14AQ9Y6G1 99 aa15.28■□□□□ 0.04
CLN3-202ENST00000355477 IGHV3OR16-10A0A075B7F0 116 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 A0A0U1RQV5 110 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 SLC22A31A6NKX4 558 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ANXA2P2A6NMY6 339 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 CDIPTO14735 213 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 SRSF10O75494 262 aaKnown RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 DCTDP32321 178 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 CXCR4P61073 352 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ACTR3P61158 418 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 IL5RAQ01344 420 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 MFGE8Q08431 387 aaPredicted RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 KPNB1Q14974 876 aaKnown RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 SNCBQ16143 134 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 TEX36Q5VZQ5 186 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ZNF322Q6U7Q0 402 aaPredicted RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 FTMTQ8N4E7 242 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ZDHHC22Q8N966 263 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 OR51E1Q8TCB6 317 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms