RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	NMD2	P38798	1089 aa	Known RBP	6.35	□□□□□ -1.39
RRP40	YOL142W	RPN10	P38886	268 aa	Known RBP	6.35	□□□□□ -1.39
RRP40	YOL142W	MTR3	P48240	250 aa	Predicted RBP	6.35	□□□□□ -1.39
RRP40	YOL142W	TRM13	Q12383	476 aa		6.35	□□□□□ -1.39
RRP40	YOL142W	FKH2	P41813	862 aa		6.34	□□□□□ -1.39
RRP40	YOL142W	RAD18	P10862	487 aa		6.33	□□□□□ -1.4
RRP40	YOL142W	CHS7	P38843	316 aa		6.33	□□□□□ -1.4
RRP40	YOL142W	PNS1	Q12412	539 aa		6.33	□□□□□ -1.4
RRP40	YOL142W	YLR149C	Q99296	730 aa		6.33	□□□□□ -1.4
RRP40	YOL142W	HOG1	P32485	435 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	SUL1	P38359	859 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	YFL052W	P43551	465 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	BNA2	P47125	453 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	SLI1	P53304	468 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	NRG1	Q03125	231 aa		6.32	□□□□□ -1.4
RRP40	YOL142W	MET3	P08536	511 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	MIH1	P23748	554 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	SIC1	P38634	284 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	ELO3	P40319	345 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	NPY1	P53164	384 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	NHX1	Q04121	633 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	DLT1	Q04216	342 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	YOL073C	Q08232	322 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	Q0142	Q9ZZW4	58 aa		6.31	□□□□□ -1.4
RRP40	YOL142W	PCL2	P25693	308 aa		6.3	□□□□□ -1.4
RRP40	YOL142W	RNT1	Q02555	471 aa		6.3	□□□□□ -1.4
RRP40	YOL142W	TFB2	Q02939	513 aa		6.3	□□□□□ -1.4
RRP40	YOL142W	CAF20	P12962	161 aa	Known RBP	6.29	□□□□□ -1.4
RRP40	YOL142W	YEL1	P34225	687 aa		6.29	□□□□□ -1.4
RRP40	YOL142W	HSL7	P38274	827 aa		6.29	□□□□□ -1.4
RRP40	YOL142W	MNN1	P39106	762 aa		6.29	□□□□□ -1.4
RRP40	YOL142W	MUP1	P50276	574 aa		6.29	□□□□□ -1.4
RRP40	YOL142W	ALG7	P07286	448 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	YKR051W	P36142	418 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	CTF4	Q01454	927 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	YLR001C	Q07895	862 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	FRE5	Q08908	694 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	TGL5	Q12043	749 aa		6.28	□□□□□ -1.4
RRP40	YOL142W	NOP14	Q99207	810 aa	Known RBP	6.28	□□□□□ -1.4
RRP40	YOL142W	PPR1	P07272	904 aa	Predicted RBP	6.27	□□□□□ -1.41
RRP40	YOL142W	YBR053C	P38235	358 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	YBR259W	P38338	688 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	YAP3	P38749	330 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	UBC9	P50623	157 aa	Predicted RBP	6.27	□□□□□ -1.41
RRP40	YOL142W	YNL193W	P53870	558 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	COG8	Q04632	607 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	RPN7	Q06103	429 aa	Known RBP	6.27	□□□□□ -1.41
RRP40	YOL142W	ATG33	Q06485	197 aa		6.27	□□□□□ -1.41
RRP40	YOL142W	BUD21	Q08492	214 aa	Predicted RBP	6.27	□□□□□ -1.41
RRP40	YOL142W	TY1B-NL2	Q99337	1749 aa	Known RBP	6.27	□□□□□ -1.41
RRP40	YOL142W	SFL1	P20134	766 aa		6.26	□□□□□ -1.41
RRP40	YOL142W	AMA1	P50082	593 aa		6.26	□□□□□ -1.41
RRP40	YOL142W	AIM14	P53109	570 aa		6.26	□□□□□ -1.41
RRP40	YOL142W	YBP2	P53169	641 aa		6.26	□□□□□ -1.41
RRP40	YOL142W	PDR11	P40550	1411 aa		6.25	□□□□□ -1.41
RRP40	YOL142W	HMG1	P12683	1054 aa		6.25	□□□□□ -1.41
RRP40	YOL142W	RPL8A	P17076	256 aa	Known RBP	6.25	□□□□□ -1.41
RRP40	YOL142W	PCM1	P38628	557 aa	Known RBP	6.25	□□□□□ -1.41
RRP40	YOL142W	MIP6	P38760	659 aa	Known RBP	6.25	□□□□□ -1.41
RRP40	YOL142W	DOT6	P40059	670 aa	Known RBP	6.25	□□□□□ -1.41
RRP40	YOL142W	YIR042C	P40586	236 aa		6.25	□□□□□ -1.41
RRP40	YOL142W	PRP31	P49704	494 aa	Predicted RBP	6.25	□□□□□ -1.41
RRP40	YOL142W	ORC4	P54791	529 aa		6.25	□□□□□ -1.41
RRP40	YOL142W	NUP192	P47054	1683 aa		6.25	□□□□□ -1.41
RRP40	YOL142W	YKR018C	P36114	725 aa		6.24	□□□□□ -1.41
RRP40	YOL142W	ECM1	P39715	212 aa		6.24	□□□□□ -1.41
RRP40	YOL142W	TEX1	P53851	422 aa	Known RBP	6.24	□□□□□ -1.41
RRP40	YOL142W	ADY4	Q05955	493 aa		6.24	□□□□□ -1.41
RRP40	YOL142W	LAT1	P12695	482 aa	Known RBP	6.23	□□□□□ -1.41
RRP40	YOL142W	ADE2	P21264	571 aa	Known RBP	6.23	□□□□□ -1.41
RRP40	YOL142W	SFP1	P32432	683 aa		6.23	□□□□□ -1.41
RRP40	YOL142W	PCL10	P53124	433 aa		6.23	□□□□□ -1.41
RRP40	YOL142W	MET13	P53128	600 aa		6.23	□□□□□ -1.41
RRP40	YOL142W	DNM1	P54861	757 aa		6.23	□□□□□ -1.41
RRP40	YOL142W	GIN4	Q12263	1142 aa		6.23	□□□□□ -1.41
RRP40	YOL142W	YJL163C	P46996	555 aa		6.22	□□□□□ -1.41
RRP40	YOL142W	YMR206W	Q03695	313 aa		6.22	□□□□□ -1.41
RRP40	YOL142W	UTP14	Q04500	899 aa	Known RBP	6.22	□□□□□ -1.41
RRP40	YOL142W	GAD1	Q04792	585 aa		6.22	□□□□□ -1.41
RRP40	YOL142W	ATG11	Q12527	1178 aa		6.22	□□□□□ -1.41
RRP40	YOL142W	CCR4	P31384	837 aa	Known RBP	6.21	□□□□□ -1.42
RRP40	YOL142W	APL2	P36000	726 aa	Predicted RBP	6.21	□□□□□ -1.42
RRP40	YOL142W	PPS1	P38148	807 aa		6.21	□□□□□ -1.42
RRP40	YOL142W	HOS4	P40480	1083 aa		6.21	□□□□□ -1.42
RRP40	YOL142W	ARP4	P80428	489 aa		6.21	□□□□□ -1.42
RRP40	YOL142W	ARG5,6	Q01217	863 aa		6.21	□□□□□ -1.42
RRP40	YOL142W	OMS1	Q06668	471 aa		6.21	□□□□□ -1.42
RRP40	YOL142W	OAR1	P35731	278 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	MOH1	P38191	138 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	YHR112C	P38716	378 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	MGS1	P40151	587 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	IRC13	Q08630	104 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	ADR1	P07248	1323 aa		6.2	□□□□□ -1.42
RRP40	YOL142W	TYS1	P36421	394 aa	Known RBP	6.19	□□□□□ -1.42
RRP40	YOL142W	SDA1	P53313	767 aa	Known RBP	6.19	□□□□□ -1.42
RRP40	YOL142W	MUK1	Q02866	612 aa		6.19	□□□□□ -1.42
RRP40	YOL142W	MCM21	Q06675	368 aa		6.19	□□□□□ -1.42
RRP40	YOL142W	GUD1	Q07729	489 aa		6.19	□□□□□ -1.42
RRP40	YOL142W	MNN4	P36044	1178 aa		6.18	□□□□□ -1.42
RRP40	YOL142W	BCD1	P38772	366 aa		6.18	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 91.9 ms