RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	CFT1	Q06632	1357 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	DED1	P06634	604 aa	Known RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	PDX1	P16451	410 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	FUR1	P18562	216 aa	Known RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	RAD51	P25454	400 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	STE13	P33894	931 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	PXA2	P34230	853 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	BYE1	P36106	594 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	DID4	P36108	232 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	EAF5	P39995	279 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	NAS2	P40555	220 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	VPS53	P47061	822 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YJR098C	P47139	656 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	SLD3	P53135	668 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ENV11	P53246	860 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	RNH1	Q04740	348 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YDL129W	Q07555	291 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	KEL3	Q08979	651 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	SMF3	Q12078	473 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	YPR027C	Q12079	277 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	TY1A-DR3	Q12441	440 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ENT1	Q12518	454 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YCL049C	P25577	312 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	CDC48	P25694	835 aa	Known RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
NUP85	YJR042W	MKS1	P34072	584 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YKL151C	P36059	337 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YBL086C	P38177	466 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ECM2	P38241	364 aa	Known RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	SRP72	P38688	640 aa	Known RBP	4.1	□□□□□ -1.75
NUP85	YJR042W	NEM1	P38757	446 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	PUG1	P40100	303 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ZDS2	P54786	942 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	YMR155W	Q03795	547 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	MFB1	Q04922	465 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ARP9	Q05123	467 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	ADY3	Q07732	790 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	GYP1	Q08484	637 aa		4.1	□□□□□ -1.75
NUP85	YJR042W	SRO9	P25567	434 aa	Known RBP	4.09	□□□□□ -1.75
NUP85	YJR042W	PGS1	P25578	521 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	SEC21	P32074	935 aa	Known RBP	4.09	□□□□□ -1.75
NUP85	YJR042W	NCL1	P38205	684 aa	Known RBP	4.09	□□□□□ -1.75
NUP85	YJR042W	RGA1	P39083	1007 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	YER010C	P40011	234 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	MAD3	P47074	515 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	PIL1	P53252	339 aa	Known RBP	4.09	□□□□□ -1.75
NUP85	YJR042W	SRC1	Q03707	834 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	DFG5	Q05031	458 aa		4.09	□□□□□ -1.75
NUP85	YJR042W	SGT2	Q12118	346 aa	Known RBP	4.09	□□□□□ -1.75
NUP85	YJR042W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
NUP85	YJR042W	PRT1	P06103	763 aa	Known RBP	4.09	□□□□□ -1.76
NUP85	YJR042W	MET17	P06106	444 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	CDC26	P14724	124 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	RRP7	P25368	297 aa	Predicted RBP	4.09	□□□□□ -1.76
NUP85	YJR042W	PER1	P25625	357 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	YAP3	P38749	330 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	YHR202W	P38887	602 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	EMP65	P40085	556 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	ASK10	P48361	1146 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	UBC9	P50623	157 aa	Predicted RBP	4.09	□□□□□ -1.76
NUP85	YJR042W	TAN1	P53072	289 aa	Predicted RBP	4.09	□□□□□ -1.76
NUP85	YJR042W	YNR040W	P53736	256 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	NCS2	P53923	493 aa	Predicted RBP	4.09	□□□□□ -1.76
NUP85	YJR042W	RSC2	Q06488	889 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	CIR2	Q08822	631 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	ENV7	Q12003	364 aa		4.09	□□□□□ -1.76
NUP85	YJR042W	ADH4	P10127	382 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	APE1	P14904	514 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	THR1	P17423	357 aa	Known RBP	4.08	□□□□□ -1.76
NUP85	YJR042W	ROX1	P25042	368 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	PPQ1	P32945	549 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	SET3	P36124	751 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	TFA2	P36145	328 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	YBR138C	P38277	524 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	YLF2	P38746	405 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	CUS1	Q02554	436 aa	Predicted RBP	4.08	□□□□□ -1.76
NUP85	YJR042W	FDC1	Q03034	503 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	UTP5	Q04177	643 aa	Known RBP	4.08	□□□□□ -1.76
NUP85	YJR042W	COG8	Q04632	607 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	EST2	Q06163	884 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	MET7	Q08645	548 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	GLO4	Q12320	285 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	DNF3	Q12674	1656 aa		4.08	□□□□□ -1.76
NUP85	YJR042W	SWI6	P09959	803 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	PET123	P17558	318 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	MRT4	P33201	236 aa	Known RBP	4.07	□□□□□ -1.76
NUP85	YJR042W	SEG2	P34250	1132 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	MCM7	P38132	845 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	PNT1	P38969	423 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	NPP2	P39997	493 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	FMP10	P40098	244 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	JJJ2	P46997	583 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	RAD17	P48581	401 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	SKP1	P52286	194 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	LCD1	Q04377	747 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	PUS5	Q06244	254 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	NUR1	Q12066	484 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	CFT2	Q12102	859 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP85	YJR042W	DCS2	Q12123	353 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	NFI1	Q12216	726 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms