RNA–Protein interactions for RNA: YDL111C

RRP42, Transcript of Exosome non-catalytic core component, yeast

Gene RRP42, Length 798 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP42	YDL111C	PRC1	P00729	532 aa		4.09	□□□□□ -1.75
RRP42	YDL111C	COX11	P19516	300 aa	Known RBP	4.09	□□□□□ -1.75
RRP42	YDL111C	KTR4	P38131	464 aa		4.09	□□□□□ -1.75
RRP42	YDL111C	HXT6	P39003	570 aa	Known RBP	4.09	□□□□□ -1.75
RRP42	YDL111C	HXT7	P39004	570 aa		4.09	□□□□□ -1.75
RRP42	YDL111C	RSC8	P43609	557 aa	Known RBP	4.09	□□□□□ -1.75
RRP42	YDL111C	TAN1	P53072	289 aa	Predicted RBP	4.09	□□□□□ -1.75
RRP42	YDL111C	PUS2	P53167	370 aa		4.09	□□□□□ -1.75
RRP42	YDL111C	RPN7	Q06103	429 aa	Known RBP	4.09	□□□□□ -1.75
RRP42	YDL111C	YOL073C	Q08232	322 aa		4.09	□□□□□ -1.75
RRP42	YDL111C	TRP4	P07285	380 aa	Predicted RBP	4.08	□□□□□ -1.76
RRP42	YDL111C	CAD1	P24813	409 aa	Known RBP	4.08	□□□□□ -1.76
RRP42	YDL111C	ERG4	P25340	473 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	KCC4	P25389	1037 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	DAL3	P32459	195 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	OAF3	P36023	863 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	YKR051W	P36142	418 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	ZIP2	P53061	704 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	SLU7	Q02775	382 aa	Known RBP	4.08	□□□□□ -1.76
RRP42	YDL111C	CRR1	Q05790	422 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	PSR2	Q07949	397 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	YPR027C	Q12079	277 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	YOR022C	Q12204	715 aa		4.08	□□□□□ -1.76
RRP42	YDL111C	FBP1	P09201	348 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	SED4	P25365	1065 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	MRS6	P32864	603 aa	Known RBP	4.07	□□□□□ -1.76
RRP42	YDL111C	SUL1	P38359	859 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	YIL108W	P40483	696 aa	Known RBP	4.07	□□□□□ -1.76
RRP42	YDL111C	YJR039W	P47107	1121 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	BFA1	P47113	574 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	RNR4	P49723	345 aa	Known RBP	4.07	□□□□□ -1.76
RRP42	YDL111C	PCL10	P53124	433 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	CNM67	P53865	581 aa	Known RBP	4.07	□□□□□ -1.76
RRP42	YDL111C	ERG5	P54781	538 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	YHM2	Q04013	314 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	TMA64	Q04600	565 aa	Known RBP	4.07	□□□□□ -1.76
RRP42	YDL111C	HAL9	Q12180	1030 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	YLR149C	Q99296	730 aa		4.07	□□□□□ -1.76
RRP42	YDL111C	RPS21A	P0C0V8	87 aa	Known RBP	4.06	□□□□□ -1.76
RRP42	YDL111C	YKU70	P32807	602 aa		4.06	□□□□□ -1.76
RRP42	YDL111C	MNN4	P36044	1178 aa		4.06	□□□□□ -1.76
RRP42	YDL111C	DUS1	P53759	423 aa	Known RBP	4.06	□□□□□ -1.76
RRP42	YDL111C	GPD1	Q00055	391 aa	Known RBP	4.06	□□□□□ -1.76
RRP42	YDL111C	DCS2	Q12123	353 aa		4.06	□□□□□ -1.76
RRP42	YDL111C	SEC65	P29478	273 aa		4.05	□□□□□ -1.76
RRP42	YDL111C	RPD3	P32561	433 aa		4.05	□□□□□ -1.76
RRP42	YDL111C	YHL041W	P38730	149 aa		4.05	□□□□□ -1.76
RRP42	YDL111C	SSZ1	P38788	538 aa	Known RBP	4.05	□□□□□ -1.76
RRP42	YDL111C	RPS21B	Q3E754	87 aa	Known RBP	4.05	□□□□□ -1.76
RRP42	YDL111C	SWI6	P09959	803 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	YKR075C	P36155	307 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	MIP6	P38760	659 aa	Known RBP	4.04	□□□□□ -1.76
RRP42	YDL111C	CTF8	P38877	133 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	BEM4	P39011	633 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	HIS6	P40545	261 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	QRI1	P43123	477 aa	Known RBP	4.04	□□□□□ -1.76
RRP42	YDL111C	STU2	P46675	888 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	HOL1	P53389	586 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	TMN2	Q04562	672 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	SSL1	Q04673	461 aa	Predicted RBP	4.04	□□□□□ -1.76
RRP42	YDL111C	OMS1	Q06668	471 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
RRP42	YDL111C	Q0142	Q9ZZW4	58 aa		4.04	□□□□□ -1.76
RRP42	YDL111C	HCA4	P20448	770 aa	Known RBP	4.03	□□□□□ -1.76
RRP42	YDL111C	SER1	P33330	395 aa	Known RBP	4.03	□□□□□ -1.76
RRP42	YDL111C	YHR078W	P38799	552 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	ACA1	P39970	489 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	SDP1	P40479	209 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	SSY5	P47002	699 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	STB4	P50104	949 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	RNT1	Q02555	471 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	SVL3	Q03088	825 aa	Known RBP	4.03	□□□□□ -1.76
RRP42	YDL111C	MCH5	Q08777	521 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	TRM13	Q12383	476 aa		4.03	□□□□□ -1.76
RRP42	YDL111C	PHO81	P17442	1178 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	HOP1	P20050	605 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	SEC21	P32074	935 aa	Known RBP	4.02	□□□□□ -1.77
RRP42	YDL111C	FAT1	P38225	669 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	SAP185	P40856	1058 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	QRI7	P43122	407 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	ENP2	P48234	707 aa	Known RBP	4.02	□□□□□ -1.77
RRP42	YDL111C	BRE5	P53741	515 aa	Known RBP	4.02	□□□□□ -1.77
RRP42	YDL111C	ARP4	P80428	489 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	ECM38	Q05902	660 aa	Predicted RBP	4.02	□□□□□ -1.77
RRP42	YDL111C	ACF2	Q12168	779 aa		4.02	□□□□□ -1.77
RRP42	YDL111C	PPR1	P07272	904 aa	Predicted RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	ALG7	P07286	448 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	MSS18	P08593	268 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	SSH4	P32343	579 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	PET309	P32522	965 aa	Predicted RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	AKL1	P38080	1108 aa	Known RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	SRP68	P38687	599 aa	Known RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	ATF1	P40353	525 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	SET2	P46995	733 aa	Known RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	MTR3	P48240	250 aa	Predicted RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	PUS4	P48567	403 aa	Known RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	NOP15	P53927	220 aa	Predicted RBP	4.01	□□□□□ -1.77
RRP42	YDL111C	ORC4	P54791	529 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	PEX19	Q07418	342 aa		4.01	□□□□□ -1.77
RRP42	YDL111C	DBF20	P32328	564 aa		4	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms